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Package 192/319HostnameOS / ArchBUILDCHECKBUILD BIN
metahdep 1.2.0
John R. Stevens
Bioconductor Changelog
Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/metahdep
Last Changed Rev: 39013 / Revision: 42512
Last Changed Date: 2009-04-20 16:24:12 -0700 (Mon, 20 Apr 2009)
wilson1 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
Package: metahdep
Version: 1.2.0
Command: E:\biocbld\bbs-2.4-bioc\R\bin\R.exe CMD check --no-vignettes metahdep_1.2.0.tar.gz
StartedAt: 2009-10-20 17:42:07 -0700 (Tue, 20 Oct 2009)
EndedAt: 2009-10-20 17:42:58 -0700 (Tue, 20 Oct 2009)
EllapsedTime: 50.6 seconds
RetCode: 0
Status: OK
CheckDir: metahdep.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.4-bioc/meat/metahdep.Rcheck'
* using R version 2.9.2 (2009-08-24)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'metahdep/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'metahdep' version '1.2.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'metahdep' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd files against version 2 parser ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

metahdep.Rcheck/00install.out:

* Installing *source* package 'metahdep' ...
** libs
  making DLL ...
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include"        -O3 -Wall  -std=gnu99 -c metahdep.c -o metahdep.o
metahdep.c: In function 'get_row_indices2':
metahdep.c:471: warning: passing argument 5 of 'metan_binary_search_unique' makes integer from pointer without a cast
gcc -shared -s -o metahdep.dll tmp.def metahdep.o -Le:/biocbld/bbs-2.4-bioc/R/bin -lR
  ... done
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
 >>> Building/Updating help pages for package 'metahdep'
     Formats: text html latex example chm 
  ES.obj-class                      text    html    latex   example chm
  HGU.DifExp.list                   text    html    latex   example chm
  HGU.newnames                      text    html    latex   example chm
  HGU.prep.list                     text    html    latex   example chm
  getPLM.es                         text    html    latex   example chm
  gloss                             text    html    latex   example chm
  metahdep.FEMA                     text    html    latex   example chm
  metahdep.HBLM                     text    html    latex   example chm
  metahdep.REMA                     text    html    latex   example chm
  metahdep                          text    html    latex   example chm
  metahdep.format                   text    html    latex   example chm
Note: removing empty section \usage in file 'metahdep.other.Rd'
Note: removing empty section \value in file 'metahdep.other.Rd'
Note: removing empty section \arguments in file 'metahdep.other.Rd'
Note: removing empty section \usage in file 'metahdep.other.Rd'
Note: removing empty section \value in file 'metahdep.other.Rd'
Note: removing empty section \arguments in file 'metahdep.other.Rd'
  metahdep.other                    text    html    latex   example chm
  metaprep-class                    text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling e:\biocbld\BBS-2~1.4-B\meat\METAHD~1.RCH\00_PKG~1\metahdep\chm\metahdep.chm


Compile time: 0 minutes, 0 seconds
14	Topics
43	Local links
0	Internet links
1	Graphic


Created e:\biocbld\BBS-2~1.4-B\meat\METAHD~1.RCH\00_PKG~1\metahdep\chm\metahdep.chm, 41,629 bytes
Compression decreased file by 29,863 bytes.
** building package indices ...
** MD5 sums
* DONE (metahdep)