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Package 176/319HostnameOS / ArchBUILDCHECKBUILD BIN
made4 1.18.0
Aedin Culhane
Bioconductor Changelog
Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/made4
Last Changed Rev: 39013 / Revision: 42512
Last Changed Date: 2009-04-20 16:24:12 -0700 (Mon, 20 Apr 2009)
wilson1 Linux (openSUSE 11.1) / x86_64  OK [ OK ]
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
Package: made4
Version: 1.18.0
Command: /home/biocbuild/bbs-2.4-bioc/R/bin/R CMD check --no-vignettes made4_1.18.0.tar.gz
StartedAt: 2009-10-20 16:55:06 -0700 (Tue, 20 Oct 2009)
EndedAt: 2009-10-20 16:55:43 -0700 (Tue, 20 Oct 2009)
EllapsedTime: 36.5 seconds
RetCode: 0
Status: OK
CheckDir: made4.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.4-bioc/meat/made4.Rcheck'
* using R version 2.9.2 (2009-08-24)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'made4/DESCRIPTION' ... OK
* this is package 'made4' version '1.18.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'made4' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
getdata: no visible binding for global variable 'intensities'
* checking Rd files ... OK
* checking Rd files against version 2 parser ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

made4.Rcheck/00install.out:

* Installing *source* package 'made4' ...
** R
** data
** inst
** preparing package for lazy loading

Attaching package: 'ade4'


	The following object(s) are masked from package:base :

	 within 

** help
*** installing help indices
 >>> Building/Updating help pages for package 'made4'
     Formats: text html latex example 
  NCI60                             text    html    latex   example
Note: removing empty section \references in file 'array2ade4.Rd'
  array2ade4                        text    html    latex   example
  bet.coinertia                     text    html    latex   example
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  between.graph                     text    html    latex   example
  bga                               text    html    latex   example
  bga.jackknife                     text    html    latex   example
  bga.suppl                         text    html    latex   example
Note: removing empty section \details in file 'checkfac.Rd'
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  checkfac                          text    html    latex
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  chime3D                           text    html    latex
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  cia                               text    html    latex   example
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  commonMap                         text    html    latex   example
  comparelists                      text    html    latex   example
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  do3d                              text    html    latex   example
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  dudi.rwcoa                        text    html    latex
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  forrwcoa                          text    html    latex
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  genes                             text    html    latex
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  genes1d                           text    html    latex   example
  getcol                            text    html    latex   example
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  getdata                           text    html    latex
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  graph1D                           text    html    latex   example
  heatplot                          text    html    latex   example
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  html3D                            text    html    latex   example
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  jmol3D                            text    html    latex
  khan                              text    html    latex   example
Note: removing empty section \references in file 'ord.Rd'
  ord                               text    html    latex   example
Note: removing empty section \value in file 'overview.Rd'
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  overview                          text    html    latex   example
  plotarrays                        text    html    latex   example
  plotgenes                         text    html    latex   example
Note: removing empty section \value in file 'pretty.dend.Rd'
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  pretty.dend                       text    html    latex   example
  randomiser                        text    html    latex   example
  s.var                             text    html    latex   example
Note: removing empty section \note in file 'sumstats.Rd'
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  sumstats                          text    html    latex   example
  suppl                             text    html    latex   example
Note: removing empty section \note in file 'topgenes.Rd'
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  topgenes                          text    html    latex   example
** building package indices ...
* DONE (made4)