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Package 171/319HostnameOS / ArchBUILDCHECKBUILD BIN
lumi 1.10.2
Pan Du
Bioconductor Changelog
Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/lumi
Last Changed Rev: 41590 / Revision: 42512
Last Changed Date: 2009-09-09 10:13:23 -0700 (Wed, 09 Sep 2009)
wilson1 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64 [ OK ] OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
Package: lumi
Version: 1.10.2
Command: E:\biocbld\bbs-2.4-bioc\R\bin\R.exe CMD build lumi
StartedAt: 2009-10-20 15:01:35 -0700 (Tue, 20 Oct 2009)
EndedAt: 2009-10-20 15:04:17 -0700 (Tue, 20 Oct 2009)
EllapsedTime: 162.4 seconds
RetCode: 0
Status: OK
PackageFile: lumi_1.10.2.tar.gz
PackageFileSize: 8.606 MiB

Command output

* checking for file 'lumi/DESCRIPTION' ... OK
* preparing 'lumi':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
* Installing *source* package 'lumi' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: AnnotationDbi
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

This is mgcv  1.5-6 . For overview type `help("mgcv-package")'.
Loading required package: DBI
Creating a new generic function for "density" in "lumi"
Creating a new generic function for "pairs" in "lumi"
Creating a new generic function for "plot" in "lumi"
** help
*** installing help indices
 >>> Building/Updating help pages for package 'lumi'
     Formats: text html latex example chm 
Note: removing empty section \examples in file 'IlluminaID2nuID.Rd'
Note: removing empty section \examples in file 'IlluminaID2nuID.Rd'
  IlluminaID2nuID                   text    html    latex           chm
  LumiBatch-class                   text    html    latex   example chm
  MAplot-methods                    text    html    latex   example chm
Note: removing empty section \references in file 'addControlData2lumi.Rd'
Note: removing empty section \references in file 'addControlData2lumi.Rd'
  addControlData2lumi               text    html    latex   example chm
  addNuID2lumi                      text    html    latex   example chm
Note: removing empty section \references in file 'affyExpresso.Rd'
Note: removing empty section \examples in file 'affyExpresso.Rd'
Note: removing empty section \references in file 'affyExpresso.Rd'
Note: removing empty section \examples in file 'affyExpresso.Rd'
  affyExpresso                      text    html    latex           chm
Note: removing empty section \references in file 'affyVstRma.Rd'
Note: removing empty section \examples in file 'affyVstRma.Rd'
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Note: removing empty section \examples in file 'affyVstRma.Rd'
  affyVstRma                        text    html    latex           chm
  bgAdjust                          text    html    latex   example chm
  boxplot-methods                   text    html    latex   example chm
  density-methods                   text    html    latex   example chm
  detectOutlier                     text    html    latex   example chm
  detectionCall                     text    html    latex   example chm
  estimateLumiCV                    text    html    latex   example chm
  example.lumi                      text    html    latex   example chm
Note: removing empty section \references in file 'getChipInfo.Rd'
Note: removing empty section \references in file 'getChipInfo.Rd'
  getChipInfo                       text    html    latex   example chm
Note: removing empty section \details in file 'getControlData.Rd'
Note: removing empty section \references in file 'getControlData.Rd'
Note: removing empty section \details in file 'getControlData.Rd'
Note: removing empty section \references in file 'getControlData.Rd'
  getControlData                    text    html    latex   example chm
Note: removing empty section \details in file 'getControlProbe.Rd'
Note: removing empty section \references in file 'getControlProbe.Rd'
Note: removing empty section \details in file 'getControlProbe.Rd'
Note: removing empty section \references in file 'getControlProbe.Rd'
  getControlProbe                   text    html    latex   example chm
Note: removing empty section \details in file 'getControlType.Rd'
Note: removing empty section \references in file 'getControlType.Rd'
Note: removing empty section \details in file 'getControlType.Rd'
Note: removing empty section \references in file 'getControlType.Rd'
  getControlType                    text    html    latex   example chm
  getNuIDMappingInfo                text    html    latex   example chm
  hist-methods                      text    html    latex   example chm
  id2seq                            text    html    latex   example chm
  inverseVST                        text    html    latex   example chm
  is.nuID                           text    html    latex   example chm
Note: removing empty section \seealso in file 'lumi.package.Rd'
Note: removing empty section \examples in file 'lumi.package.Rd'
Note: removing empty section \seealso in file 'lumi.package.Rd'
Note: removing empty section \examples in file 'lumi.package.Rd'
  lumi.package                      text    html    latex           chm
  lumiB                             text    html    latex   example chm
  lumiExpresso                      text    html    latex   example chm
Note: removing empty section \note in file 'lumiN.Rd'
Note: removing empty section \references in file 'lumiN.Rd'
Note: removing empty section \note in file 'lumiN.Rd'
Note: removing empty section \references in file 'lumiN.Rd'
  lumiN                             text    html    latex   example chm
  lumiQ                             text    html    latex   example chm
  lumiR                             text    html    latex   example chm
  lumiR.batch                       text    html    latex   example chm
  lumiT                             text    html    latex   example chm
Note: removing empty section \examples in file 'monoSmu.Rd'
Note: removing empty section \examples in file 'monoSmu.Rd'
  monoSmu                           text    html    latex           chm
Note: removing empty section \references in file 'monoSpline.Rd'
Note: removing empty section \examples in file 'monoSpline.Rd'
Note: removing empty section \references in file 'monoSpline.Rd'
Note: removing empty section \examples in file 'monoSpline.Rd'
  monoSpline                        text    html    latex           chm
  nuID2EntrezID                     text    html    latex   example chm
  nuID2IlluminaID                   text    html    latex   example chm
  nuID2RefSeqID                     text    html    latex   example chm
  nuID2probeID                      text    html    latex   example chm
  nuID2targetID                     text    html    latex   example chm
  pairs-methods                     text    html    latex   example chm
  plot-methods                      text    html    latex   example chm
Note: removing empty section \references in file 'plotControlData.Rd'
Note: removing empty section \references in file 'plotControlData.Rd'
  plotControlData                   text    html    latex   example chm
Note: removing empty section \details in file 'plotHousekeepingGene.Rd'
Note: removing empty section \references in file 'plotHousekeepingGene.Rd'
Note: removing empty section \details in file 'plotHousekeepingGene.Rd'
Note: removing empty section \references in file 'plotHousekeepingGene.Rd'
  plotHousekeepingGene              text    html    latex   example chm
  plotSampleRelation                text    html    latex   example chm
Note: removing empty section \details in file 'plotStringencyGene.Rd'
Note: removing empty section \references in file 'plotStringencyGene.Rd'
Note: removing empty section \details in file 'plotStringencyGene.Rd'
Note: removing empty section \references in file 'plotStringencyGene.Rd'
  plotStringencyGene                text    html    latex   example chm
Note: removing empty section \details in file 'plotVST.Rd'
Note: removing empty section \details in file 'plotVST.Rd'
  plotVST                           text    html    latex   example chm
  probeID2nuID                      text    html    latex   example chm
  produceGEOPlatformFile            text    html    latex   example chm
Note: removing empty section \examples in file 'produceGEOSampleInfoTemplate.Rd'
Note: removing empty section \examples in file 'produceGEOSampleInfoTemplate.Rd'
  produceGEOSampleInfoTemplate      text    html    latex           chm
  produceGEOSubmissionFile          text    html    latex   example chm
Note: removing empty section \note in file 'rsn.Rd'
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Note: removing empty section \note in file 'rsn.Rd'
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  rsn                               text    html    latex           chm
  seq2id                            text    html    latex   example chm
Note: removing empty section \references in file 'ssn.Rd'
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Note: removing empty section \references in file 'ssn.Rd'
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  ssn                               text    html    latex           chm
  targetID2nuID                     text    html    latex   example chm
  vst                               text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702



Compiling e:\biocbld\bbs-2.4-bioc\meat\lumi\chm\lumi.chm





Compile time: 0 minutes, 2 seconds

55	Topics

304	Local links

0	Internet links

1	Graphic





Created e:\biocbld\bbs-2.4-bioc\meat\lumi\chm\lumi.chm, 79,261 bytes

Compression decreased file by 127,541 bytes.

** building package indices ...
** MD5 sums
* DONE (lumi)
* creating vignettes ... OK
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'lumi_1.10.2.tar.gz'