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Package 160/319HostnameOS / ArchBUILDCHECKBUILD BIN
keggorth 1.6.0
VJ Carey
Bioconductor Changelog
Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/keggorth
Last Changed Rev: 39013 / Revision: 42512
Last Changed Date: 2009-04-20 16:24:12 -0700 (Mon, 20 Apr 2009)
wilson1 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
Package: keggorth
Version: 1.6.0
Command: E:\biocbld\bbs-2.4-bioc\R\bin\R.exe CMD check --no-vignettes keggorth_1.6.0.tar.gz
StartedAt: 2009-10-20 17:25:41 -0700 (Tue, 20 Oct 2009)
EndedAt: 2009-10-20 17:26:39 -0700 (Tue, 20 Oct 2009)
EllapsedTime: 58.6 seconds
RetCode: 0
Status: OK
CheckDir: keggorth.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.4-bioc/meat/keggorth.Rcheck'
* using R version 2.9.2 (2009-08-24)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'keggorth/DESCRIPTION' ... OK
* this is package 'keggorth' version '1.6.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'keggorth' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
getKOprobes: no visible binding for global variable 'KOgraph'
getKOtags: no visible binding for global variable 'KOgraph'
* checking Rd files ... OK
* checking Rd files against version 2 parser ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

keggorth.Rcheck/00install.out:

* Installing *source* package 'keggorth' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: AnnotationDbi
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: DBI
** help
*** installing help indices
 >>> Building/Updating help pages for package 'keggorth'
     Formats: text html latex example chm 
  getKOprobes                       text    html    latex   example chm
  indRender                         text    html    latex   example chm
  keggDF2graph                      text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling e:\biocbld\BBS-2~1.4-B\meat\KEGGOR~1.RCH\00_PKG~1\keggorth\chm\keggorth.chm


Compile time: 0 minutes, 0 seconds
4	Topics
10	Local links
0	Internet links
1	Graphic


Created e:\biocbld\BBS-2~1.4-B\meat\KEGGOR~1.RCH\00_PKG~1\keggorth\chm\keggorth.chm, 18,797 bytes
Compression increased file by 5,399 bytes.
** building package indices ...
** MD5 sums
* DONE (keggorth)