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Package 149/319HostnameOS / ArchBUILDCHECKBUILD BIN
hopach 2.4.0
Katherine S. Pollard
Bioconductor Changelog
Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/hopach
Last Changed Rev: 39013 / Revision: 42512
Last Changed Date: 2009-04-20 16:24:12 -0700 (Mon, 20 Apr 2009)
wilson1 Linux (openSUSE 11.1) / x86_64  OK [ OK ]
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
Package: hopach
Version: 2.4.0
Command: /home/biocbuild/bbs-2.4-bioc/R/bin/R CMD check --no-vignettes hopach_2.4.0.tar.gz
StartedAt: 2009-10-20 16:38:21 -0700 (Tue, 20 Oct 2009)
EndedAt: 2009-10-20 16:39:19 -0700 (Tue, 20 Oct 2009)
EllapsedTime: 57.5 seconds
RetCode: 0
Status: OK
CheckDir: hopach.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.4-bioc/meat/hopach.Rcheck'
* using R version 2.9.2 (2009-08-24)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'hopach/DESCRIPTION' ... OK
* this is package 'hopach' version '2.4.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'hopach' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd files against version 2 parser ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

hopach.Rcheck/00install.out:

* Installing *source* package 'hopach' ...
** libs
gcc -std=gnu99 -I/home/biocbuild/bbs-2.4-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c Rdistances.c -o Rdistances.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.4-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c hdist.c -o hdist.o
gcc -std=gnu99 -shared -L/usr/local/lib64 -o hopach.so Rdistances.o hdist.o -L/home/biocbuild/bbs-2.4-bioc/R/lib -lR
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Creating a new generic function for "as.vector" in "hopach"
Creating a generic function from function "as.hdist"
Creating a new generic function for "as.matrix" in "hopach"
** help
*** installing help indices
 >>> Building/Updating help pages for package 'hopach'
     Formats: text html latex example 
  boot2fuzzy                        text    html    latex   example
  bootplot                          text    html    latex   example
  bootstrap                         text    html    latex   example
  correlationordering               text    html    latex   example
  disscosangle                      text    html    latex   example
  distancematrix                    text    html    latex   example
  dplot                             text    html    latex   example
  golub                             text    html    latex
  hdist-class                       text    html    latex   example
  hopach                            text    html    latex   example
  hopach.internal                   text    html    latex   example
  hopach2tree                       text    html    latex   example
  labelstomss                       text    html    latex   example
  makeoutput                        text    html    latex   example
  prune                             text    html    latex   example
** building package indices ...
* DONE (hopach)