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Package 132/319HostnameOS / ArchBUILDCHECKBUILD BIN
goProfiles 1.6.0
Alex Sanchez
Bioconductor Changelog
Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/goProfiles
Last Changed Rev: 39013 / Revision: 42512
Last Changed Date: 2009-04-20 16:24:12 -0700 (Mon, 20 Apr 2009)
wilson1 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
Package: goProfiles
Version: 1.6.0
Command: E:\biocbld\bbs-2.4-bioc\R\bin\R.exe CMD check --no-vignettes goProfiles_1.6.0.tar.gz
StartedAt: 2009-10-20 17:13:54 -0700 (Tue, 20 Oct 2009)
EndedAt: 2009-10-20 17:15:12 -0700 (Tue, 20 Oct 2009)
EllapsedTime: 78.0 seconds
RetCode: 0
Status: OK
CheckDir: goProfiles.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.4-bioc/meat/goProfiles.Rcheck'
* using R version 2.9.2 (2009-08-24)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'goProfiles/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'goProfiles' version '1.6.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'goProfiles' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd files against version 2 parser ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

goProfiles.Rcheck/00install.out:

* Installing *source* package 'goProfiles' ...
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: DBI
** help
*** installing help indices
 >>> Building/Updating help pages for package 'goProfiles'
     Formats: text html latex example chm 
  CD4ids                            text    html    latex   example chm
  GOTermsList                       text    html    latex   example chm
  basicProfile                      text    html    latex   example chm
  compSummary                       text    html    latex   example chm
  compareGOProfiles                 text    html    latex   example chm
  compareGeneLists                  text    html    latex   example chm
  compareProfilesLists              text    html    latex   example chm
  conversionFunctions               text    html    latex   example chm
  drosophila                        text    html    latex   example chm
  equivSummary                      text    html    latex   example chm
  equivalentGOProfiles              text    html    latex   example chm
  expandedLevel                     text    html    latex   example chm
  expandedProfile                   text    html    latex   example chm
  fitGOProfile                      text    html    latex   example chm
  goProfiles-package                text    html    latex           chm
  hugoIds                           text    html    latex   example chm
  mergeProfilesLists                text    html    latex   example chm
  omimIds                           text    html    latex   example chm
  plotProfiles                      text    html    latex   example chm
  printProfiles                     text    html    latex   example chm
  prostateIds                       text    html    latex   example chm
  sampleProfiles                    text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling e:\biocbld\BBS-2~1.4-B\meat\GOPROF~1.RCH\00_PKG~1\GOPROF~1\chm\goProfiles.chm


Compile time: 0 minutes, 1 second
23	Topics
86	Local links
1	Internet link
1	Graphic


Created e:\biocbld\BBS-2~1.4-B\meat\GOPROF~1.RCH\00_PKG~1\GOPROF~1\chm\goProfiles.chm, 55,967 bytes
Compression decreased file by 50,457 bytes.
** building package indices ...
** MD5 sums
* DONE (goProfiles)