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Package 101/319HostnameOS / ArchBUILDCHECKBUILD BIN
flowStats 1.2.0
Florian Hahne
Bioconductor Changelog
Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/flowStats
Last Changed Rev: 39013 / Revision: 42512
Last Changed Date: 2009-04-20 16:24:12 -0700 (Mon, 20 Apr 2009)
wilson1 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK [ OK ] OK 
Package: flowStats
Version: 1.2.0
Command: /Library/Frameworks/R.framework/Versions/2.9/Resources/bin/R CMD check --no-vignettes flowStats_1.2.0.tar.gz
StartedAt: 2009-10-20 17:31:35 -0700 (Tue, 20 Oct 2009)
EndedAt: 2009-10-20 17:37:27 -0700 (Tue, 20 Oct 2009)
EllapsedTime: 351.3 seconds
RetCode: 0
Status: OK
CheckDir: flowStats.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory '/Users/biocbuild/bbs-2.4-bioc/meat/flowStats.Rcheck'
* using R version 2.9.2 Patched (2009-08-24 r49420)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'flowStats/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'flowStats' version '1.2.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'flowStats' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd files against version 2 parser ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

flowStats.Rcheck/00install.out:

* Installing *source* package ‘flowStats’ ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: rrcov
Loading required package: robustbase
Loading required package: pcaPP
Loading required package: mvtnorm
pcaPP 0.1-1 loaded
Scalable Robust Estimators with High Breakdown Point (version 1.0-00)

Attaching package: 'flowCore'


	The following object(s) are masked from package:stats :

	 alias,
	 filter 

Loading required package: splines
Loading required package: zoo

Attaching package: 'zoo'


	The following object(s) are masked from package:base :

	 as.Date.numeric 

KernSmooth 2.23 loaded
Copyright M. P. Wand 1997-2009
Warning in namespaceImportFrom(self, asNamespace(ns), allVars, allFuns,  :
  Found methods to import for function "addName" but not the generic itself
** help
*** installing help indices
 >>> Building/Updating help pages for package 'flowStats'
     Formats: text html latex example 
  ITN                               text    html    latex
  autoGate                          text    html    latex   example
  binByRef                          text    html    latex   example
  calcPBChiSquare                   text    html    latex   example
  calcPearsonChi                    text    html    latex   example
  curvPeaks                         text    html    latex   example
  density1d                         text    html    latex   example
  flowStats-package                 text    html    latex
  landmarkMatrix                    text    html    latex   example
  lympgGate                         text    html    latex   example
  plotBins                          text    html    latex   example
  proBin                            text    html    latex   example
  quadrantGate                      text    html    latex   example
  rangeGate                         text    html    latex   example
  warpSet                           text    html    latex   example
** building package indices ...
* DONE (flowStats)