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Package 100/319HostnameOS / ArchBUILDCHECKBUILD BIN
flowQ 1.4.0
F. Hahne
Bioconductor Changelog
Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/flowQ
Last Changed Rev: 39013 / Revision: 42512
Last Changed Date: 2009-04-20 16:24:12 -0700 (Mon, 20 Apr 2009)
wilson1 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
pitt Mac OS X Tiger (10.4.11) / i386  ERROR  skipped  skipped 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
Package: flowQ
Version: 1.4.0
Command: E:\biocbld\bbs-2.4-bioc\R\bin\R.exe CMD check --no-vignettes flowQ_1.4.0.tar.gz
StartedAt: 2009-10-20 16:56:16 -0700 (Tue, 20 Oct 2009)
EndedAt: 2009-10-20 16:59:05 -0700 (Tue, 20 Oct 2009)
EllapsedTime: 169.5 seconds
RetCode: 0
Status: OK
CheckDir: flowQ.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.4-bioc/meat/flowQ.Rcheck'
* using R version 2.9.2 (2009-08-24)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'flowQ/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'flowQ' version '1.4.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'flowQ' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
evaluateProcess: multiple local function definitions for 'efun' with
  different formal arguments
normalizeSets : <anonymous>: no visible global function definition for
  'warpSet'
qaProcess.2DStatsPlot: no visible binding for global variable 'Aliquot'
qaProcess.DensityPlot: no visible binding for global variable 'Aliquot'
qaProcess.ECDFPlot: no visible binding for global variable 'Aliquot'
* checking Rd files ... OK
* checking Rd files against version 2 parser ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

flowQ.Rcheck/00install.out:

* Installing *source* package 'flowQ' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: flowCore
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: rrcov
Loading required package: robustbase
Loading required package: pcaPP
Loading required package: mvtnorm
pcaPP 0.1-1 loaded
Scalable Robust Estimators with High Breakdown Point (version 1.0-00)

Attaching package: 'flowCore'


	The following object(s) are masked from package:stats :

	 alias,
	 filter 

KernSmooth 2.23 loaded
Copyright M. P. Wand 1997-2009
Loading required package: KernSmooth
Loading required package: tools

Attaching package: 'latticeExtra'


	The following object(s) are masked from package:flowViz :

	 ecdfplot 

** help
*** installing help indices
 >>> Building/Updating help pages for package 'flowQ'
     Formats: text html latex example chm 
  aggregatorList-class              text    html    latex   example chm
  binaryAggregator-class            text    html    latex   example chm
  discreteAggregator-class          text    html    latex   example chm
  evaluateProcess                   text    html    latex   example chm
  factorAggregator-class            text    html    latex   example chm
  flowQ-package                     text    html    latex   example chm
  locateDuplicatedParameters        text    html    latex   example chm
  normalizeSets                     text    html    latex   example chm
  numericAggregator-class           text    html    latex   example chm
  outlier-class                     text    html    latex   example chm
  outlierResult-class               text    html    latex   example chm
  outliers-methods                  text    html    latex           chm
  qData                             text    html    latex           chm
  qaAggregator-class                text    html    latex   example chm
  qaGraph-class                     text    html    latex   example chm
  qaGraphList-class                 text    html    latex   example chm
  qaProcess-class                   text    html    latex   example chm
  qaProcess.2DStatsPlot             text    html    latex   example chm
  qaProcess.BoundaryPlot            text    html    latex   example chm
  qaProcess.DensityPlot             text    html    latex   example chm
  qaProcess.ECDFPlot                text    html    latex   example chm
  qaProcess.KLDistPlot              text    html    latex   example chm
  qaProcess.cellnumber              text    html    latex   example chm
  qaProcess.marginevents            text    html    latex   example chm
  qaProcess.timeflow                text    html    latex   example chm
  qaProcess.timeline                text    html    latex   example chm
  qaProcessFrame-class              text    html    latex   example chm
  qaProcessSummary-class            text    html    latex           chm
  qaReport                          text    html    latex   example chm
  rangeAggregator-class             text    html    latex   example chm
  stringAggregator-class            text    html    latex   example chm
  validProcess                      text    html    latex           chm
  writeQAReport                     text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling e:\biocbld\BBS-2~1.4-B\meat\FLOWQ~1.RCH\00_PKG~1\flowQ\chm\flowQ.chm


Compile time: 0 minutes, 0 seconds
34	Topics
340	Local links
0	Internet links
1	Graphic


Created e:\biocbld\BBS-2~1.4-B\meat\FLOWQ~1.RCH\00_PKG~1\flowQ\chm\flowQ.chm, 51,082 bytes
Compression decreased file by 89,426 bytes.
** building package indices ...
** MD5 sums
* DONE (flowQ)