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Package 97/319HostnameOS / ArchBUILDCHECKBUILD BIN
flowClust 2.2.0
Raphael Gottardo
Bioconductor Changelog
Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/flowClust
Last Changed Rev: 41695 / Revision: 42512
Last Changed Date: 2009-09-15 08:18:22 -0700 (Tue, 15 Sep 2009)
wilson1 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK [ OK ]
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
Package: flowClust
Version: 2.2.0
Command: E:\biocbld\bbs-2.4-bioc\R\bin\R.exe CMD INSTALL --build --library=flowClust.buildbin-libdir flowClust_2.2.0.tar.gz
StartedAt: 2009-10-20 18:57:05 -0700 (Tue, 20 Oct 2009)
EndedAt: 2009-10-20 18:57:30 -0700 (Tue, 20 Oct 2009)
EllapsedTime: 24.5 seconds
RetCode: 0
Status: OK
PackageFile: flowClust_2.2.0.zip
PackageFileSize: 563.5 KiB

Command output

* Installing *source* package 'flowClust' ...

  Using auto-selected zip options '--use-zip-help'


   **********************************************
   WARNING: this package has a configure script
         It probably needs manual configuration
   **********************************************


** libs
  making DLL ...
gcc -I"E:/biocbld/bbs-2.4-bioc/R/include"     -IE:/biocbld/bbs-2.4-bioc/R/src/include -IC:/gsl/include   -O3 -Wall  -std=gnu99 -c BoxCox.c -o BoxCox.o
gcc -I"E:/biocbld/bbs-2.4-bioc/R/include"     -IE:/biocbld/bbs-2.4-bioc/R/src/include -IC:/gsl/include   -O3 -Wall  -std=gnu99 -c Nu.c -o Nu.o
gcc -I"E:/biocbld/bbs-2.4-bioc/R/include"     -IE:/biocbld/bbs-2.4-bioc/R/src/include -IC:/gsl/include   -O3 -Wall  -std=gnu99 -c flowClust.c -o flowClust.o
flowClust.c: In function 'flowClust':
flowClust.c:49: warning: 's' may be used uninitialized in this function
flowClust.c:49: warning: 's2' may be used uninitialized in this function
flowClust.c:51: warning: 's3' may be used uninitialized in this function
gcc -I"E:/biocbld/bbs-2.4-bioc/R/include"     -IE:/biocbld/bbs-2.4-bioc/R/src/include -IC:/gsl/include   -O3 -Wall  -std=gnu99 -c flowClustGaussian.c -o flowClustGaussian.o
flowClustGaussian.c: In function 'flowClustGaussian':
flowClustGaussian.c:34: warning: 's' may be used uninitialized in this function
gcc -I"E:/biocbld/bbs-2.4-bioc/R/include"     -IE:/biocbld/bbs-2.4-bioc/R/src/include -IC:/gsl/include   -O3 -Wall  -std=gnu99 -c ranMVNT.c -o ranMVNT.o
gcc -shared -s -o flowClust.dll tmp.def BoxCox.o Nu.o flowClust.o flowClustGaussian.o ranMVNT.o -LC:/gsl/bin -lgsl -lgslcblas -lm -LE:/biocbld/bbs-2.4-bioc/R/bin -lR
Info: resolving _gsl_root_fsolver_brent by linking to __imp__gsl_root_fsolver_brent (auto-import)
Info: resolving _gsl_min_fminimizer_brent by linking to __imp__gsl_min_fminimizer_brent (auto-importc:/rtools/mingw/bin/../lib/gcc/mingw32/4.2.1-sjlj/../../../../mingw32/bin/ld.exe: warning: auto-importing has been activated without --enable-auto-import specified on the command line.
This should work unless it involves constant data structures referencing symbols from auto-imported DLLs.)

  ... done
** R
** data
** inst
** preparing package for lazy loading
by using mclust, you accept the license agreement in the LICENSE file
and at http://www.stat.washington.edu/mclust/license.txt

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: rrcov
Loading required package: robustbase
Loading required package: pcaPP
Loading required package: mvtnorm
pcaPP 0.1-1 loaded
Scalable Robust Estimators with High Breakdown Point (version 1.0-00)

Attaching package: 'flowCore'


	The following object(s) are masked from package:stats :

	 alias,
	 filter 

Warning in .findOrCopyClass(class2, classDef2, where, "subclass") :
  Class "Ulist" is defined (with package slot "rrcov") but no metadata object found to revise subclass information---not exported?  Making a copy in package "flowClust"
Warning in .findOrCopyClass(class2, classDef2, where, "subclass") :
  Class "Uvector" is defined (with package slot "rrcov") but no metadata object found to revise subclass information---not exported?  Making a copy in package "flowClust"
** help
*** installing help indices
 >>> Building/Updating help pages for package 'flowClust'
     Formats: text html latex example chm 
  Map                               text    html    latex           chm
  SimulateMixture                   text    html    latex   example chm
  Subset                            text    html    latex           chm
  box                               text    html    latex   example chm
  density                           text    html    latex           chm
  dmvt                              text    html    latex           chm
  dmvtmix                           text    html    latex           chm
  flowClust-internal                text    html    latex           chm
  flowClust-package                 text    html    latex           chm
  flowClust                         text    html    latex   example chm
  hist                              text    html    latex           chm
  miscellaneous                     text    html    latex           chm
  plot.flowClust                    text    html    latex           chm
  plot.flowCore                     text    html    latex           chm
  plot.flowDens                     text    html    latex           chm
  rbox                              text    html    latex           chm
  rituximab                         text    html    latex           chm
  ruleOutliers                      text    html    latex           chm
  show.flowClust                    text    html    latex           chm
  show.tmixFilter                   text    html    latex           chm
  split                             text    html    latex           chm
  summary                           text    html    latex           chm
  tmixFilter                        text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702



Compiling e:\biocbld\bbs-2.4-bioc\tmpdir\RtmpnUQ53a\R.INSTALL678418be\flowClust\chm\flowClust.chm





Compile time: 0 minutes, 2 seconds

24	Topics

280	Local links

0	Internet links

1	Graphic





Created e:\biocbld\bbs-2.4-bioc\tmpdir\RtmpnUQ53a\R.INSTALL678418be\flowClust\chm\flowClust.chm, 57,729 bytes

Compression decreased file by 86,813 bytes.

** building package indices ...
** MD5 sums
packaged installation of 'flowClust' as flowClust_2.2.0.zip
* DONE (flowClust)