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Package 91/319HostnameOS / ArchBUILDCHECKBUILD BIN
explorase 1.8.1
Michael Lawrence
Bioconductor Changelog
Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/explorase
Last Changed Rev: 39218 / Revision: 42512
Last Changed Date: 2009-04-29 07:22:10 -0700 (Wed, 29 Apr 2009)
wilson1 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386 N O T   S U P P O R T E D
pelham Mac OS X Leopard (10.5.8) / i386  OK [ OK ] OK 
Package: explorase
Version: 1.8.1
Command: /Library/Frameworks/R.framework/Versions/2.9/Resources/bin/R CMD check --no-vignettes explorase_1.8.1.tar.gz
StartedAt: 2009-10-20 17:28:16 -0700 (Tue, 20 Oct 2009)
EndedAt: 2009-10-20 17:29:08 -0700 (Tue, 20 Oct 2009)
EllapsedTime: 52.4 seconds
RetCode: 0
Status: OK
CheckDir: explorase.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory '/Users/biocbuild/bbs-2.4-bioc/meat/explorase.Rcheck'
* using R version 2.9.2 Patched (2009-08-24 r49420)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'explorase/DESCRIPTION' ... OK
* this is package 'explorase' version '1.8.1'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'explorase' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
exp_loadDesign: no visible global function definition for ‘pData’
exp_loadExpressionSet: no visible global function definition for
  ‘phenoData’
exp_loadExpressionSet: no visible global function definition for
  ‘featureData’
exp_loadExpressionSet: no visible global function definition for
  ‘exprs’
exp_loadInfo: no visible global function definition for ‘pData’
explorase: no visible global function definition for ‘exp_loadNetwork’
* checking Rd files ... OK
* checking Rd files against version 2 parser ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

explorase.Rcheck/00install.out:

* Installing *source* package ‘explorase’ ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
 >>> Building/Updating help pages for package 'explorase'
     Formats: text html latex example 
Note: removing empty section \examples in file 'exp-addEntityType-vx.Rd'
  exp-addEntityType-vx              text    html    latex
Note: removing empty section \details in file 'exp-addFilterRule-rn.Rd'
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  exp-addFilterRule-rn              text    html    latex
Note: removing empty section \details in file 'exp-calcAngleDist-31.Rd'
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  exp-calcAngleDist-31              text    html    latex
Note: removing empty section \details in file 'exp-calcCanberraDist.Rd'
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  exp-calcCanberraDist              text    html    latex
Note: removing empty section \details in file 'exp-calcCorrelationDist-45.Rd'
Note: removing empty section \examples in file 'exp-calcCorrelationDist-45.Rd'
  exp-calcCorrelationDist-45        text    html    latex
Note: removing empty section \details in file 'exp-calcDiff-y4.Rd'
Note: removing empty section \examples in file 'exp-calcDiff-y4.Rd'
  exp-calcDiff-y4                   text    html    latex
Note: removing empty section \details in file 'exp-calcEuclideanDist-dn.Rd'
Note: removing empty section \examples in file 'exp-calcEuclideanDist-dn.Rd'
  exp-calcEuclideanDist-dn          text    html    latex
Note: removing empty section \details in file 'exp-calcMahalanobisDist-r1.Rd'
Note: removing empty section \examples in file 'exp-calcMahalanobisDist-r1.Rd'
  exp-calcMahalanobisDist-r1        text    html    latex
Note: removing empty section \details in file 'exp-calcResiduals-ps.Rd'
Note: removing empty section \examples in file 'exp-calcResiduals-ps.Rd'
  exp-calcResiduals-ps              text    html    latex
Note: removing empty section \details in file 'exp-calcZeroCorDist-by.Rd'
Note: removing empty section \examples in file 'exp-calcZeroCorDist-by.Rd'
  exp-calcZeroCorDist-by            text    html    latex
  exp-close                         text    html    latex
Note: removing empty section \details in file 'exp-colorEntities-1h.Rd'
Note: removing empty section \examples in file 'exp-colorEntities-1h.Rd'
  exp-colorEntities-1h              text    html    latex
Note: removing empty section \examples in file 'exp-dataset-6l.Rd'
  exp-dataset-6l                    text    html    latex
Note: removing empty section \details in file 'exp-designFactors-72.Rd'
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  exp-designFactors-72              text    html    latex
Note: removing empty section \details in file 'exp-designFrame-d0.Rd'
Note: removing empty section \examples in file 'exp-designFrame-d0.Rd'
  exp-designFrame-d0                text    html    latex
Note: removing empty section \details in file 'exp-designSelection-5s.Rd'
Note: removing empty section \arguments in file 'exp-designSelection-5s.Rd'
Note: removing empty section \examples in file 'exp-designSelection-5s.Rd'
  exp-designSelection-5s            text    html    latex
Note: removing empty section \details in file 'exp-entitiesInList-df.Rd'
Note: removing empty section \examples in file 'exp-entitiesInList-df.Rd'
  exp-entitiesInList-df             text    html    latex
Note: removing empty section \details in file 'exp-entityFrame-4j.Rd'
Note: removing empty section \examples in file 'exp-entityFrame-4j.Rd'
  exp-entityFrame-4j                text    html    latex
Note: removing empty section \details in file 'exp-entitySelection-11.Rd'
Note: removing empty section \examples in file 'exp-entitySelection-11.Rd'
  exp-entitySelection-11            text    html    latex
Note: removing empty section \details in file 'exp-entityType-69.Rd'
Note: removing empty section \arguments in file 'exp-entityType-69.Rd'
Note: removing empty section \examples in file 'exp-entityType-69.Rd'
  exp-entityType-69                 text    html    latex
Note: removing empty section \details in file 'exp-entityTypes-9e.Rd'
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Note: removing empty section \examples in file 'exp-entityTypes-9e.Rd'
  exp-entityTypes-9e                text    html    latex
Note: removing empty section \details in file 'exp-filterRules-vt.Rd'
Note: removing empty section \examples in file 'exp-filterRules-vt.Rd'
  exp-filterRules-vt                text    html    latex
Note: removing empty section \details in file 'exp-findPatterns-yw.Rd'
Note: removing empty section \examples in file 'exp-findPatterns-yw.Rd'
  exp-findPatterns-yw               text    html    latex
Note: removing empty section \details in file 'exp-ggobi-69.Rd'
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  exp-ggobi-69                      text    html    latex
Note: removing empty section \details in file 'exp-isRunning-fo.Rd'
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Note: removing empty section \examples in file 'exp-isRunning-fo.Rd'
  exp-isRunning-fo                  text    html    latex
Note: removing empty section \details in file 'exp-listFrame-gp.Rd'
Note: removing empty section \arguments in file 'exp-listFrame-gp.Rd'
Note: removing empty section \examples in file 'exp-listFrame-gp.Rd'
  exp-listFrame-gp                  text    html    latex
Note: removing empty section \details in file 'exp-listSelection.Rd'
Note: removing empty section \examples in file 'exp-listSelection.Rd'
  exp-listSelection                 text    html    latex
Note: removing empty section \examples in file 'exp-loadData-bo.Rd'
  exp-loadData-bo                   text    html    latex
Note: removing empty section \details in file 'exp-loadDesign-35.Rd'
Note: removing empty section \examples in file 'exp-loadDesign-35.Rd'
  exp-loadDesign-35                 text    html    latex
Note: removing empty section \examples in file 'exp-loadFiles-1w.Rd'
  exp-loadFiles-1w                  text    html    latex
Note: removing empty section \examples in file 'exp-loadInfo-gk.Rd'
  exp-loadInfo-gk                   text    html    latex
Note: removing empty section \examples in file 'exp-loadLists-pr.Rd'
  exp-loadLists-pr                  text    html    latex
Note: removing empty section \examples in file 'exp-loadProject-1g.Rd'
  exp-loadProject-1g                text    html    latex
Note: removing empty section \details in file 'exp-newList-bs.Rd'
Note: removing empty section \examples in file 'exp-newList-bs.Rd'
  exp-newList-bs                    text    html    latex
Note: removing empty section \details in file 'exp-removeFilterRules-1i.Rd'
Note: removing empty section \examples in file 'exp-removeFilterRules-1i.Rd'
  exp-removeFilterRules-1i          text    html    latex
Note: removing empty section \details in file 'exp-showClustering-b7.Rd'
Note: removing empty section \examples in file 'exp-showClustering-b7.Rd'
  exp-showClustering-b7             text    html    latex
Note: removing empty section \details in file 'exp-showPatterns-bh.Rd'
Note: removing empty section \examples in file 'exp-showPatterns-bh.Rd'
  exp-showPatterns-bh               text    html    latex
Note: removing empty section \details in file 'exp-showResults-sk.Rd'
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  exp-showResults-sk                text    html    latex
Note: removing empty section \details in file 'exp-toggleFilterRules-ts.Rd'
Note: removing empty section \examples in file 'exp-toggleFilterRules-ts.Rd'
  exp-toggleFilterRules-ts          text    html    latex
Note: removing empty section \examples in file 'exp_bioc.Rd'
  exp_bioc                          text    html    latex
  explorase                         text    html    latex
** building package indices ...
* DONE (explorase)