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Package 88/319HostnameOS / ArchBUILDCHECKBUILD BIN
edd 1.22.0
Vince Carey
Bioconductor Changelog
Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/edd
Last Changed Rev: 39013 / Revision: 42512
Last Changed Date: 2009-04-20 16:24:12 -0700 (Mon, 20 Apr 2009)
wilson1 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
Package: edd
Version: 1.22.0
Command: E:\biocbld\bbs-2.4-bioc\R\bin\R.exe CMD check --no-vignettes edd_1.22.0.tar.gz
StartedAt: 2009-10-20 16:51:38 -0700 (Tue, 20 Oct 2009)
EndedAt: 2009-10-20 16:52:52 -0700 (Tue, 20 Oct 2009)
EllapsedTime: 73.9 seconds
RetCode: 0
Status: OK
CheckDir: edd.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.4-bioc/meat/edd.Rcheck'
* using R version 2.9.2 (2009-08-24)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'edd/DESCRIPTION' ... OK
* this is package 'edd' version '1.22.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'edd' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
testVec,numeric-eddDist-logical: possible error in on.exit(warn =
  owarn): unused argument(s) (warn = owarn)
* checking Rd files ... OK
* checking Rd files against version 2 parser ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

edd.Rcheck/00install.out:

* Installing *source* package 'edd' ...
** R
** inst
** preparing package for lazy loading
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

** help
*** installing help indices
 >>> Building/Updating help pages for package 'edd'
     Formats: text html latex example chm 
  centerScale                       text    html    latex   example chm
  edd                               text    html    latex   example chm
  eddDist-class                     text    html    latex   example chm
  eddObsolete                       text    html    latex   example chm
  flatQQNorm                        text    html    latex   example chm
  latEDtable                        text    html    latex   example chm
  makeCandmat.raw                   text    html    latex   example chm
Note: removing empty section \details in file 'maxKSp.Rd'
Note: removing empty section \details in file 'maxKSp.Rd'
  maxKSp                            text    html    latex   example chm
  plotED                            text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling e:\biocbld\BBS-2~1.4-B\meat\EDD~1.RCH\00_PKG~1\edd\chm\edd.chm


Compile time: 0 minutes, 0 seconds
10	Topics
72	Local links
0	Internet links
1	Graphic


Created e:\biocbld\BBS-2~1.4-B\meat\EDD~1.RCH\00_PKG~1\edd\chm\edd.chm, 30,544 bytes
Compression decreased file by 16,878 bytes.
** building package indices ...
** MD5 sums
* DONE (edd)