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Package 45/319HostnameOS / ArchBUILDCHECKBUILD BIN
biocViews 1.12.3
Biocore Team c/o BioC user list
Bioconductor Changelog
Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/biocViews
Last Changed Rev: 40387 / Revision: 42512
Last Changed Date: 2009-06-29 16:38:07 -0700 (Mon, 29 Jun 2009)
wilson1 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
Package: biocViews
Version: 1.12.3
Command: E:\biocbld\bbs-2.4-bioc\R\bin\R.exe CMD check --no-vignettes biocViews_1.12.3.tar.gz
StartedAt: 2009-10-20 16:24:55 -0700 (Tue, 20 Oct 2009)
EndedAt: 2009-10-20 16:25:49 -0700 (Tue, 20 Oct 2009)
EllapsedTime: 53.3 seconds
RetCode: 0
Status: OK
CheckDir: biocViews.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.4-bioc/meat/biocViews.Rcheck'
* using R version 2.9.2 (2009-08-24)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'biocViews/DESCRIPTION' ... OK
* this is package 'biocViews' version '1.12.3'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'biocViews' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
htmlDoc,BiocView: no visible binding for global variable 'stylesheet'
* checking Rd files ... OK
* checking Rd files against version 2 parser ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

biocViews.Rcheck/00install.out:

* Installing *source* package 'biocViews' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
 >>> Building/Updating help pages for package 'biocViews'
     Formats: text html latex example chm 
  BiocView-class                    text    html    latex           chm
  Htmlized-class                    text    html    latex           chm
  PackageDetail-class               text    html    latex   example chm
  RepositoryDetail-class            text    html    latex           chm
  biocViews-package                 text    html    latex   example chm
  biocViewsVocab                    text    html    latex   example chm
  extractManuals                    text    html    latex           chm
  extractVignettes                  text    html    latex           chm
  genReposControlFiles              text    html    latex           chm
  getBiocSubViews                   text    html    latex   example chm
  getBiocViews                      text    html    latex   example chm
  getPacksAndViews                  text    html    latex           chm
  getSubTerms                       text    html    latex   example chm
  htmlDoc                           text    html    latex           chm
  htmlFilename                      text    html    latex           chm
  htmlValue                         text    html    latex           chm
  writeBiocViews                    text    html    latex           chm
  writeHtmlDoc                      text    html    latex           chm
  writePackageDetailHtml            text    html    latex           chm
  writeRepositoryHtml               text    html    latex           chm
  writeTopLevelView                 text    html    latex           chm
  write_REPOSITORY                  text    html    latex           chm
  write_SYMBOLS                     text    html    latex           chm
  write_VIEWS                       text    html    latex           chm
Microsoft HTML Help Compiler 4.74.8702

Compiling e:\biocbld\BBS-2~1.4-B\meat\BIOCVI~1.RCH\00_PKG~1\BIOCVI~1\chm\biocViews.chm


Compile time: 0 minutes, 0 seconds
25	Topics
117	Local links
0	Internet links
1	Graphic


Created e:\biocbld\BBS-2~1.4-B\meat\BIOCVI~1.RCH\00_PKG~1\BIOCVI~1\chm\biocViews.chm, 39,864 bytes
Compression decreased file by 49,237 bytes.
** building package indices ...
** MD5 sums
* DONE (biocViews)