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Package 34/319HostnameOS / ArchBUILDCHECKBUILD BIN
beadarray 1.12.1
Mark Dunning
Bioconductor Changelog
Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/beadarray
Last Changed Rev: 42135 / Revision: 42512
Last Changed Date: 2009-10-02 09:48:47 -0700 (Fri, 02 Oct 2009)
wilson1 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64 [ OK ] OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
Package: beadarray
Version: 1.12.1
Command: E:\biocbld\bbs-2.4-bioc\R\bin\R.exe CMD build beadarray
StartedAt: 2009-10-20 14:43:24 -0700 (Tue, 20 Oct 2009)
EndedAt: 2009-10-20 14:43:57 -0700 (Tue, 20 Oct 2009)
EllapsedTime: 33.4 seconds
RetCode: 0
Status: OK
PackageFile: beadarray_1.12.1.tar.gz
PackageFileSize: 9.736 MiB

Command output

* checking for file 'beadarray/DESCRIPTION' ... OK
* preparing 'beadarray':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
* Installing *source* package 'beadarray' ...
** libs
  making DLL ...
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include"        -O3 -Wall  -std=gnu99 -c BASH.c -o BASH.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include"        -O3 -Wall  -std=gnu99 -c BLImagePlot.c -o BLImagePlot.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include"        -O3 -Wall  -std=gnu99 -c HULK.c -o HULK.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include"        -O3 -Wall  -std=gnu99 -c createBeadSummaryData.c -o createBeadSummaryData.o
createBeadSummaryData.c: In function 'findAllOutliers':
createBeadSummaryData.c:223: warning: 'status' may be used uninitialized in this function
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include"        -O3 -Wall  -std=gnu99 -c findProbeIndices.c -o findProbeIndices.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include"        -O3 -Wall  -std=gnu99 -c readBeadImages.c -o readBeadImages.o
readBeadImages.c: In function 'getPixelIntensities':
readBeadImages.c:368: warning: unused variable 'result'
readBeadImages.c: In function 'readBeadImage':
readBeadImages.c:578: warning: 'offset' may be used uninitialized in this function
readBeadImages.c:578: warning: 'records' may be used uninitialized in this function
readBeadImages.c:577: warning: 'StripOffset' may be used uninitialized in this function
readBeadImages.c:577: warning: 'ImageHeight' may be used uninitialized in this function
readBeadImages.c:577: warning: 'ImageWidth' may be used uninitialized in this function
readBeadImages.c:577: warning: 'BeginData' may be used uninitialized in this function
gcc -shared -s -o beadarray.dll tmp.def BASH.o BLImagePlot.o HULK.o createBeadSummaryData.o findProbeIndices.o readBeadImages.o -Le:/biocbld/bbs-2.4-bioc/R/bin -lR
  ... done
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

** help
*** installing help indices
 >>> Building/Updating help pages for package 'beadarray'
     Formats: text html latex example chm 
  BASH                              text    html    latex   example chm
  BASHCompact                       text    html    latex   example chm
  BASHDiffuse                       text    html    latex   example chm
  BASHExtended                      text    html    latex   example chm
  BGFilter                          text    html    latex   example chm
  BGFilterWeighted                  text    html    latex   example chm
  BLData                            text    html    latex           chm
  BSData                            text    html    latex           chm
  ExpressionControlData             text    html    latex   example chm
  HULK                              text    html    latex   example chm
  HULKResids                        text    html    latex   example chm
  addArrayMask                      text    html    latex   example chm
  arrayNames                        text    html    latex   example chm
  backgroundControlPlot             text    html    latex           chm
  backgroundCorrect                 text    html    latex   example chm
  beadResids                        text    html    latex   example chm
  beadarrayUsersGuide               text    html    latex   example chm
  boxplotBeads                      text    html    latex   example chm
  calculateBeadLevelScores          text    html    latex           chm
  calculateDetection                text    html    latex   example chm
  chooseClusters                    text    html    latex   example chm
  class-BeadLevelList               text    html    latex           chm
  class.ExpressionSetIllumina       text    html    latex           chm
  closeImage                        text    html    latex   example chm
  combineBeadLevelLists             text    html    latex           chm
  copyBeadLevelLists                text    html    latex   example chm
  createBeadSummaryData             text    html    latex   example chm
  denseRegions                      text    html    latex   example chm
  findAllOutliers                   text    html    latex   example chm
  findBeadStatus                    text    html    latex   example chm
  generateE                         text    html    latex   example chm
  generateNeighbours                text    html    latex   example chm
  getAnnotation                     text    html    latex   example chm
  getArrayData                      text    html    latex   example chm
  getVariance                       text    html    latex   example chm
  imageplot                         text    html    latex   example chm
  interactivePlots                  text    html    latex           chm
  lmhPlot                           text    html    latex           chm
  medianNormalise                   text    html    latex   example chm
  normaliseIllumina                 text    html    latex   example chm
  numBeads                          text    html    latex   example chm
  outlierplot                       text    html    latex           chm
  plotBeadDensities                 text    html    latex   example chm
  plotBeadIntensities               text    html    latex   example chm
  plotBeadLocations                 text    html    latex   example chm
  plotMA                            text    html    latex   example chm
  plotMAXY                          text    html    latex   example chm
  plotOnSAM                         text    html    latex           chm
  plotRG                            text    html    latex           chm
  plotXY                            text    html    latex   example chm
  poscontPlot                       text    html    latex           chm
  probePairsPlot                    text    html    latex           chm
  qcBeadLevel                       text    html    latex   example chm
  rankInvariantNormalise            text    html    latex   example chm
  readBGX                           text    html    latex   example chm
  readBeadSummaryData               text    html    latex   example chm
  readIllumina                      text    html    latex   example chm
  readQC                            text    html    latex   example chm
  setWeights                        text    html    latex   example chm
  viewBeads                         text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702



Compiling e:\biocbld\bbs-2.4-bioc\meat\beadarray\chm\beadarray.chm





Compile time: 0 minutes, 1 second

61	Topics

253	Local links

1	Internet link

1	Graphic





Created e:\biocbld\bbs-2.4-bioc\meat\beadarray\chm\beadarray.chm, 108,788 bytes

Compression decreased file by 152,583 bytes.

** building package indices ...
** MD5 sums
* DONE (beadarray)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'beadarray_1.12.1.tar.gz'