arrayQualityMetrics 2.2.3
Audrey Kauffmann
| Bioconductor Changelog | | Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/arrayQualityMetrics | | Last Changed Rev: 42106 / Revision: 42512 | | Last Changed Date: 2009-10-01 07:30:44 -0700 (Thu, 01 Oct 2009) |
| wilson1 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | [ OK ] | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.4-bioc/meat/arrayQualityMetrics.Rcheck'
* using R version 2.9.2 (2009-08-24)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'arrayQualityMetrics/DESCRIPTION' ... OK
* this is package 'arrayQualityMetrics' version '2.2.3'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'arrayQualityMetrics' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
aqm.probesmap: no visible binding for global variable 'ProbesMap'
* checking Rd files ... OK
* checking Rd files against version 2 parser ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK
* Installing *source* package 'arrayQualityMetrics' ...
** R
** inst
** preparing package for lazy loading
Loading required package: affy
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: gcrma
Loading required package: Biostrings
Loading required package: IRanges
Attaching package: 'IRanges'
The following object(s) are masked from package:base :
cbind,
duplicated,
order,
pmax,
pmax.int,
pmin,
pmin.int,
rank,
rbind,
rep.int,
sapply,
sort,
table,
unique
Loading required package: preprocessCore
Attaching package: 'affyPLM'
The following object(s) are masked from package:stats :
resid,
residuals,
weights
** help
*** installing help indices
>>> Building/Updating help pages for package 'arrayQualityMetrics'
Formats: text html latex example chm
XYfromGAL text html latex chm
aqm.boxplot text html latex chm
aqm.density text html latex chm
aqm.heatmap text html latex chm
aqm.maplot text html latex chm
aqm.meansd text html latex chm
aqm.nuse text html latex chm
aqm.pca text html latex chm
aqm.plot text html latex chm
aqm.pmmm text html latex example chm
aqm.prepaffy text html latex example chm
aqm.prepdata text html latex example chm
aqm.probesmap text html latex chm
aqm.qcstats text html latex example chm
aqm.rle text html latex chm
aqm.rnadeg text html latex chm
aqm.spatial text html latex chm
aqm.spatialbg text html latex chm
aqm.writereport text html latex example chm
aqmobj.box text html latex chm
aqmobj.dens text html latex chm
aqmobj.heat text html latex chm
aqmobj.ma text html latex chm
aqmobj.msd text html latex chm
aqmobj.nuse text html latex chm
aqmobj.pca text html latex chm
aqmobj.pmmm text html latex chm
aqmobj.prepaffy text html latex chm
aqmobj.prepdata text html latex chm
aqmobj.probesmap text html latex chm
aqmobj.qcs text html latex chm
aqmobj.rle text html latex chm
aqmobj.rnadeg text html latex chm
aqmobj.spatial text html latex chm
aqmobj.spatialbg text html latex chm
arrayQualityMetrics text html latex chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\BBS-2~1.4-B\meat\ARRAYQ~2.RCH\00_PKG~1\ARRAYQ~1\chm\arrayQualityMetrics.chm
Compile time: 0 minutes, 1 second
37 Topics
231 Local links
0 Internet links
1 Graphic
Created e:\biocbld\BBS-2~1.4-B\meat\ARRAYQ~2.RCH\00_PKG~1\ARRAYQ~1\chm\arrayQualityMetrics.chm, 39,094 bytes
Compression decreased file by 94,135 bytes.
** building package indices ...
** MD5 sums
* DONE (arrayQualityMetrics)