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Package 22/319HostnameOS / ArchBUILDCHECKBUILD BIN
annotate 1.22.0
Biocore Team c/o BioC user list
Bioconductor Changelog
Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/annotate
Last Changed Rev: 39013 / Revision: 42512
Last Changed Date: 2009-04-20 16:24:12 -0700 (Mon, 20 Apr 2009)
wilson1 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
Package: annotate
Version: 1.22.0
Command: E:\biocbld\bbs-2.4-bioc\R\bin\R.exe CMD check --no-vignettes annotate_1.22.0.tar.gz
StartedAt: 2009-10-20 16:08:04 -0700 (Tue, 20 Oct 2009)
EndedAt: 2009-10-20 16:10:38 -0700 (Tue, 20 Oct 2009)
EllapsedTime: 154.2 seconds
RetCode: 0
Status: OK
CheckDir: annotate.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.4-bioc/meat/annotate.Rcheck'
* using R version 2.9.2 (2009-08-24)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'annotate/DESCRIPTION' ... OK
* this is package 'annotate' version '1.22.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'annotate' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd files against version 2 parser ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

annotate.Rcheck/00install.out:

* Installing *source* package 'annotate' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

** help
*** installing help indices
 >>> Building/Updating help pages for package 'annotate'
     Formats: text html latex example chm 
Note: removing empty section \value in file 'ACCNUMStats.Rd'
Note: removing empty section \value in file 'ACCNUMStats.Rd'
  ACCNUMStats                       text    html    latex   example chm
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  UniGeneQuery                      text    html    latex   example chm
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  dropECode                         text    html    latex   example chm
  entrezGeneByID                    text    html    latex   example chm
Note: removing empty section \seealso in file 'entrezGeneQuery.Rd'
Note: removing empty section \seealso in file 'entrezGeneQuery.Rd'
  entrezGeneQuery                   text    html    latex   example chm
  filterGOByOntology                text    html    latex   example chm
  findNeighbors                     text    html    latex   example chm
  genbank                           text    html    latex   example chm
  genelocator                       text    html    latex   example chm
  getAnnMap                         text    html    latex   example chm
  getEvidence                       text    html    latex   example chm
  getGOTerm                         text    html    latex   example chm
  getOntology                       text    html    latex   example chm
  getPMInfo                         text    html    latex   example chm
  getSYMBOL                         text    html    latex   example chm
  getSeq4Acc                        text    html    latex   example chm
  getTDRows                         text    html    latex           chm
  hasGOannote                       text    html    latex   example chm
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  hgu95All                          text    html    latex   example chm
  hgu95Asym                         text    html    latex   example chm
  homoData-class                    text    html    latex   example chm
  htmlpage                          text    html    latex   example chm
  isValidkey                        text    html    latex   example chm
  makeAnchor                        text    html    latex   example chm
  mapOrgs                           text    html    latex           chm
  neighborGeneFinder                text    html    latex   example chm
  p2LL                              text    html    latex   example chm
  pm.abstGrep                       text    html    latex   example chm
  pm.getabst                        text    html    latex   example chm
  pm.titles                         text    html    latex   example chm
  pmAbst2HTML                       text    html    latex   example chm
  pmid2MIAME                        text    html    latex   example chm
  pmidQuery                         text    html    latex   example chm
  probesByLL                        text    html    latex   example chm
  pubMedAbst-class                  text    html    latex   example chm
  pubmed                            text    html    latex   example chm
  readGEOAnn                        text    html    latex   example chm
  serializeEnv                      text    html    latex   example chm
  setRepository                     text    html    latex   example chm
  updateSymbolsToValidKeys          text    html    latex   example chm
  usedChromGenes                    text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling e:\biocbld\BBS-2~1.4-B\meat\ANNOTA~1.RCH\00_PKG~1\annotate\chm\annotate.chm


Compile time: 0 minutes, 1 second
61	Topics
297	Local links
7	Internet links
1	Graphic


Created e:\biocbld\BBS-2~1.4-B\meat\ANNOTA~1.RCH\00_PKG~1\annotate\chm\annotate.chm, 96,911 bytes
Compression decreased file by 139,646 bytes.
** building package indices ...
** MD5 sums
* DONE (annotate)