affycoretools 1.16.3
James W. MacDonald
| Bioconductor Changelog | | Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/affycoretools | | Last Changed Rev: 40559 / Revision: 42512 | | Last Changed Date: 2009-07-08 08:17:32 -0700 (Wed, 08 Jul 2009) |
| wilson1 | Linux (openSUSE 11.1) / x86_64 | OK | WARNINGS | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | [ WARNINGS ] | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | WARNINGS | OK |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | WARNINGS | OK |
* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.4-bioc/meat/affycoretools.Rcheck'
* using R version 2.9.2 (2009-08-24)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'affycoretools/DESCRIPTION' ... OK
* this is package 'affycoretools' version '1.16.3'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'affycoretools' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd files against version 2 parser ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... WARNING
Undocumented code objects:
cv filterfun genefilter kOverA pOverA
All user-level objects in a package should have documentation entries.
See the chapter 'Writing R documentation files' in manual 'Writing R
Extensions'.
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK
WARNING: There was 1 warning, see
E:/biocbld/bbs-2.4-bioc/meat/affycoretools.Rcheck/00check.log
for details
* Installing *source* package 'affycoretools' ...
** R
** inst
** preparing package for lazy loading
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: AnnotationDbi
Loading required package: DBI
** help
*** installing help indices
>>> Building/Updating help pages for package 'affycoretools'
Formats: text html latex example chm
affystart text html latex chm
annBM text html latex example chm
convert.back text html latex chm
extractStats text html latex chm
foldFilt text html latex chm
foldFiltBM text html latex chm
getCols text html latex chm
getIndex text html latex chm
getOrder text html latex chm
getUniqueLL text html latex chm
getans text html latex chm
houtSig text html latex chm
hyperG2annaffy text html latex chm
hyperGoutput text html latex chm
intNames text html latex chm
limma2annaffy text html latex chm
limma2biomaRt text html latex chm
make.cl text html latex chm
makeFCList text html latex chm
makeIndices text html latex chm
pca.legend text html latex chm
plotDeg text html latex example chm
plotMA text html latex chm
plotPCA text html latex example chm
probes2table text html latex chm
probes2tableBM text html latex chm
tableFilt text html latex chm
vennCounts2 text html latex example chm
vennSelect text html latex chm
vennSelectBM text html latex chm
vennSelectFC text html latex chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\BBS-2~1.4-B\meat\AFFYCO~4.RCH\00_PKG~1\AFFYCO~1\chm\affycoretools.chm
Compile time: 0 minutes, 1 second
32 Topics
54 Local links
0 Internet links
1 Graphic
Created e:\biocbld\BBS-2~1.4-B\meat\AFFYCO~4.RCH\00_PKG~1\AFFYCO~1\chm\affycoretools.chm, 61,760 bytes
Compression decreased file by 75,012 bytes.
** building package indices ...
** MD5 sums
* DONE (affycoretools)