Back to the "Multiple platform build/check report"[A] B  C  D  E  F  G  H  I  J  K  L  M  N  O  P  Q  R  S  T  U  V  W  X  Y  Z 

Package 6/319HostnameOS / ArchBUILDCHECKBUILD BIN
affy 1.22.1
Rafael A. Irizarry
Bioconductor Changelog
Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/affy
Last Changed Rev: 40973 / Revision: 42512
Last Changed Date: 2009-08-03 06:33:08 -0700 (Mon, 03 Aug 2009)
wilson1 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64 [ OK ] OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
Package: affy
Version: 1.22.1
Command: E:\biocbld\bbs-2.4-bioc\R\bin\R.exe CMD build affy
StartedAt: 2009-10-20 14:04:47 -0700 (Tue, 20 Oct 2009)
EndedAt: 2009-10-20 14:07:48 -0700 (Tue, 20 Oct 2009)
EllapsedTime: 181.2 seconds
RetCode: 0
Status: OK
PackageFile: affy_1.22.1.tar.gz
PackageFileSize: 1.471 MiB

Command output

* checking for file 'affy/DESCRIPTION' ... OK
* preparing 'affy':
* checking DESCRIPTION meta-information ... OK
* cleaning src
make: Nothing to be done for `clean'.
* installing the package to re-build vignettes
* Installing *source* package 'affy' ...

   **********************************************
   WARNING: this package has a configure script
         It probably needs manual configuration
   **********************************************


** libs
  making DLL ...
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -DHAVE_ZLIB  -I"e:/biocbld/bbs-2.4-bioc/R/library/preprocessCore/include"     -O3 -Wall  -std=gnu99 -c chipbackground.c -o chipbackground.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -DHAVE_ZLIB  -I"e:/biocbld/bbs-2.4-bioc/R/library/preprocessCore/include"     -O3 -Wall  -std=gnu99 -c getall_locations.c -o getall_locations.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -DHAVE_ZLIB  -I"e:/biocbld/bbs-2.4-bioc/R/library/preprocessCore/include"     -O3 -Wall  -std=gnu99 -c mas5calls.c -o mas5calls.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -DHAVE_ZLIB  -I"e:/biocbld/bbs-2.4-bioc/R/library/preprocessCore/include"     -O3 -Wall  -std=gnu99 -c rma2.c -o rma2.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -DHAVE_ZLIB  -I"e:/biocbld/bbs-2.4-bioc/R/library/preprocessCore/include"     -O3 -Wall  -std=gnu99 -c rma_common.c -o rma_common.o
gcc -shared -s -o affy.dll tmp.def chipbackground.o getall_locations.o mas5calls.o rma2.o rma_common.o -lRzlib -Le:/biocbld/bbs-2.4-bioc/R/bin -lR
  ... done
** R
** data
** demo
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Creating a new generic function for "open" in "affy"
Creating a new generic function for "close" in "affy"
Creating a new generic function for "colnames" in "affy"
Creating a new generic function for "barplot" in "affy"
** help
*** installing help indices
 >>> Building/Updating help pages for package 'affy'
     Formats: text html latex example chm 
  AffyBatch-class                   text    html    latex   example chm
  AffyRNAdeg                        text    html    latex   example chm
  MAplot                            text    html    latex   example chm
  ProbeSet-class                    text    html    latex   example chm
  ProgressBarText-class             text    html    latex   example chm
  SpikeIn                           text    html    latex           chm
  affy-options                      text    html    latex   example chm
  affy.scalevalue.exprSet           text    html    latex           chm
  barplot.ProbeSet                  text    html    latex   example chm
  bg.adjust                         text    html    latex           chm
  bgc                               text    html    latex   example chm
  cdfFromBioC                       text    html    latex           chm
  cdfenv.example                    text    html    latex           chm
  cleancdfname                      text    html    latex   example chm
  debug.affy123                     text    html    latex           chm
  expresso                          text    html    latex   example chm
  expressoWidget                    text    html    latex   example chm
  fit.li.wong                       text    html    latex   example chm
  generateExprSet-methods           text    html    latex   example chm
  generateExprVal-methods           text    html    latex   example chm
  generateExprVal.method.avgdiff    text    html    latex   example chm
  generateExprVal.method.playerout  text    html    latex           chm
  hlog                              text    html    latex           chm
  justrma                           text    html    latex           chm
  list.celfiles                     text    html    latex   example chm
  loess.normalize                   text    html    latex           chm
  maffy.normalise                   text    html    latex   example chm
  maffy.subset                      text    html    latex   example chm
  mas5                              text    html    latex   example chm
  mas5calls                         text    html    latex   example chm
  merge.AffyBatch                   text    html    latex           chm
  multiloess                        text    html    latex           chm
  mva.pairs                         text    html    latex   example chm
  normalize-methods                 text    html    latex   example chm
  normalize                         text    html    latex           chm
  normalize.constant                text    html    latex           chm
  normalize.contrast                text    html    latex           chm
  normalize.invariantset            text    html    latex           chm
  normalize.loess                   text    html    latex   example chm
  normalize.qspline                 text    html    latex           chm
  normalize.quantiles               text    html    latex           chm
  normalize.quantiles.robust        text    html    latex           chm
  pairs.AffyBatch                   text    html    latex           chm
  plot.ProbeSet                     text    html    latex   example chm
  plot.density                      text    html    latex   example chm
  plotLocation                      text    html    latex   example chm
  pmcorrect                         text    html    latex   example chm
  ppsetApply                        text    html    latex   example chm
  probeMatch-methods                text    html    latex           chm
  probeNames-methods                text    html    latex           chm
  read.affybatch                    text    html    latex   example chm
  read.probematrix                  text    html    latex           chm
  rma                               text    html    latex   example chm
  setAffyOptions                    text    html    latex   example chm
  simplemultiLoess                  text    html    latex           chm
  summary                           text    html    latex           chm
  tukey.biweight                    text    html    latex           chm
  whatcdf                           text    html    latex           chm
  xy2indices                        text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702



Compiling e:\biocbld\bbs-2.4-bioc\meat\affy\chm\affy.chm





Compile time: 0 minutes, 2 seconds

60	Topics

352	Local links

9	Internet links

1	Graphic





Created e:\biocbld\bbs-2.4-bioc\meat\affy\chm\affy.chm, 99,229 bytes

Compression decreased file by 160,069 bytes.

** building package indices ...
** MD5 sums
* DONE (affy)
* creating vignettes ... OK
* cleaning src
make: Nothing to be done for `clean'.
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'affy_1.22.1.tar.gz'