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Package 288/319HostnameOS / ArchBUILDCHECKBUILD BIN
SNPchip 1.8.0
Robert Scharpf
Bioconductor Changelog
Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/SNPchip
Last Changed Rev: 39013 / Revision: 42512
Last Changed Date: 2009-04-20 16:24:12 -0700 (Mon, 20 Apr 2009)
wilson1 Linux (openSUSE 11.1) / x86_64  OK [ OK ]
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
Package: SNPchip
Version: 1.8.0
Command: /home/biocbuild/bbs-2.4-bioc/R/bin/R CMD check --no-vignettes SNPchip_1.8.0.tar.gz
StartedAt: 2009-10-20 18:00:28 -0700 (Tue, 20 Oct 2009)
EndedAt: 2009-10-20 18:02:04 -0700 (Tue, 20 Oct 2009)
EllapsedTime: 95.5 seconds
RetCode: 0
Status: OK
CheckDir: SNPchip.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.4-bioc/meat/SNPchip.Rcheck'
* using R version 2.9.2 (2009-08-24)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'SNPchip/DESCRIPTION' ... OK
* this is package 'SNPchip' version '1.8.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'SNPchip' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd files against version 2 parser ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

SNPchip.Rcheck/00install.out:

* Installing *source* package 'SNPchip' ...
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Creating a new generic function for "summary" in "SNPchip"
Creating a new generic function for "plot" in "SNPchip"
** help
*** installing help indices
 >>> Building/Updating help pages for package 'SNPchip'
     Formats: text html latex example 
  HmmPredict-class                  text    html    latex   example
  ParESet-class                     text    html    latex   example
  ParSnpCallSet-class               text    html    latex   example
  ParSnpCopyNumberSet-class         text    html    latex   example
  ParSnpSet-class                   text    html    latex   example
  RatioSnpSet-class                 text    html    latex   example
  RatioSnpSet-methods               text    html    latex
  addFeatureData-method             text    html    latex
  alleleA                           text    html    latex
  alleleB                           text    html    latex
  centromere                        text    html    latex   example
  chromosome2integer                text    html    latex
  chromosomeAnnotation              text    html    latex   example
  chromosomeSize                    text    html    latex   example
  coerce-methods                    text    html    latex
  crlmmOut                          text    html    latex   example
  cytoband                          text    html    latex   example
  dbSnpId                           text    html    latex   example
  enzyme                            text    html    latex
  featureData-accessors             text    html    latex
  fragmentLength                    text    html    latex
  getPar                            text    html    latex
  hapmap                            text    html    latex   example
  hmmPredict                        text    html    latex
  plotCytoband                      text    html    latex   example
  plotPredictions                   text    html    latex   example
  plotSnp                           text    html    latex   example
Note: removing empty section \source in file 'sample.snpset.Rd'
Note: removing empty section \details in file 'sample.snpset.Rd'
Note: removing empty section \references in file 'sample.snpset.Rd'
  sample.snpset                     text    html    latex   example
Note: removing empty section \author in file 'selectSomeIndex.Rd'
Note: removing empty section \details in file 'selectSomeIndex.Rd'
Note: removing empty section \note in file 'selectSomeIndex.Rd'
Note: removing empty section \references in file 'selectSomeIndex.Rd'
Note: removing empty section \examples in file 'selectSomeIndex.Rd'
Note: removing empty section \seealso in file 'selectSomeIndex.Rd'
  selectSomeIndex                   text    html    latex
  show-methods                      text    html    latex
Note: removing empty section \value in file 'showSummary.Rd'
Note: removing empty section \details in file 'showSummary.Rd'
Note: removing empty section \note in file 'showSummary.Rd'
Note: removing empty section \references in file 'showSummary.Rd'
Note: removing empty section \examples in file 'showSummary.Rd'
  showSummary                       text    html    latex
  smoothSnp                         text    html    latex
  snpPar                            text    html    latex   example
  snpset                            text    html    latex
  summary-methods                   text    html    latex
  updateObject-methods              text    html    latex
** building package indices ...
* DONE (SNPchip)