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Package 249/319HostnameOS / ArchBUILDCHECKBUILD BIN
RdbiPgSQL 1.18.1
Jianhua Zhang
Bioconductor Changelog
Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/RdbiPgSQL
Last Changed Rev: 39222 / Revision: 42512
Last Changed Date: 2009-04-29 12:45:48 -0700 (Wed, 29 Apr 2009)
wilson1 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64 N O T   S U P P O R T E D
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK [ OK ] OK 
Package: RdbiPgSQL
Version: 1.18.1
Command: /Library/Frameworks/R.framework/Versions/2.9/Resources/bin/R CMD check --no-vignettes RdbiPgSQL_1.18.1.tar.gz
StartedAt: 2009-10-20 18:38:22 -0700 (Tue, 20 Oct 2009)
EndedAt: 2009-10-20 18:38:41 -0700 (Tue, 20 Oct 2009)
EllapsedTime: 18.2 seconds
RetCode: 0
Status: OK
CheckDir: RdbiPgSQL.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory '/Users/biocbuild/bbs-2.4-bioc/meat/RdbiPgSQL.Rcheck'
* using R version 2.9.2 Patched (2009-08-24 r49420)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'RdbiPgSQL/DESCRIPTION' ... OK
* this is package 'RdbiPgSQL' version '1.18.1'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'RdbiPgSQL' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd files against version 2 parser ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... NOTE
S3 methods shown with full name in documentation object 'dbColumnInfo.PgSQL.result':
  dbColumnInfo.PgSQL.result

S3 methods shown with full name in documentation object 'dbReadTable.PgSQL.conn':
  dbReadTable.PgSQL.conn

The \usage entries for S3 methods should use the \method markup and not
their full name.
See the chapter 'Writing R documentation files' in manual 'Writing R
Extensions'.
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $BLAS_LIBS ... OK
* checking examples ... OK
* checking PDF version of manual ... OK

RdbiPgSQL.Rcheck/00install.out:

* Installing *source* package ‘RdbiPgSQL’ ...
creating cache ./config.cache
checking for PQconnectdb in -lpq... yes
checking how to run the C preprocessor... cc -E
checking for /usr/include/libpq-fe.h... no
checking how to run the C preprocessor... cc -E
checking for /usr/include/pgsql/libpq-fe.h... no
checking how to run the C preprocessor... cc -E
checking for /usr/include/postgresql/libpq-fe.h... no
checking how to run the C preprocessor... cc -E
checking for /usr/local/include/libpq-fe.h... no
checking how to run the C preprocessor... cc -E
checking for /usr/local/include/pgsql/libpq-fe.h... yes
updating cache ./config.cache
creating ./config.status
creating src/Makevars
** libs
** arch - i386
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/i386 -I/usr/local/include/pgsql -I/usr/local/include    -fPIC  -g -O2 -Wall -c PgSQL.c -o PgSQL.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/i386 -I/usr/local/include/pgsql -I/usr/local/include    -fPIC  -g -O2 -Wall -c PgSQLInit.c -o PgSQLInit.o
PgSQL.h:9: warning: ‘mkInteger’ defined but not used
PgSQL.h:18: warning: ‘mkLogical’ defined but not used
PgSQL.h:27: warning: ‘mkString_safe’ defined but not used
PgSQL.h:33: warning: ‘fetchPgString’ defined but not used
PgSQL.h:46: warning: ‘fetchPgInteger’ defined but not used
PgSQL.h:66: warning: ‘fetchPgDouble’ defined but not used
PgSQL.h:89: warning: ‘fetchPgLogical’ defined but not used
gcc-4.2 -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o RdbiPgSQL.so PgSQL.o PgSQLInit.o -lpq -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
** R
** preparing package for lazy loading
** help
*** installing help indices
 >>> Building/Updating help pages for package 'RdbiPgSQL'
     Formats: text html latex example 
  PgSQL                             text    html    latex
  dbAppendTable.PgSQL.conn          text    html    latex
Note: removing empty section \usage in file 'dbAppendTable.Rd'
Note: removing empty section \arguments in file 'dbAppendTable.Rd'
  dbAppendTable                     text    html    latex
  dbClearResult.PgSQL.result        text    html    latex
  dbColumnInfo.PgSQL.result         text    html    latex
  dbConnect.PgSQL                   text    html    latex
  dbConnectionInfo.PgSQL.conn       text    html    latex
  dbDisconnect.PgSQL.conn           text    html    latex
  dbGetQuery.PgSQL.conn             text    html    latex
  dbGetResult.PgSQL.result          text    html    latex
  dbListTables.PgSQL.conn           text    html    latex
  dbReadTable.PgSQL.conn            text    html    latex
  dbResultInfo.PgSQL.result         text    html    latex
  dbSendQuery.PgSQL.conn            text    html    latex
  dbWriteTable.PgSQL.conn           text    html    latex
Note: removing empty section \usage in file 'internal.Rd'
Note: removing empty section \arguments in file 'internal.Rd'
  internal                          text    html    latex
  psql                              text    html    latex
** building package indices ...
* DONE (RdbiPgSQL)