RWebServices 1.8.0
Martin Morgan
| Bioconductor Changelog | | Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/RWebServices | | Last Changed Rev: 39013 / Revision: 42512 | | Last Changed Date: 2009-04-20 16:24:12 -0700 (Mon, 20 Apr 2009) |
| wilson1 | Linux (openSUSE 11.1) / x86_64 | OK | [ OK ] | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | N O T S U P P O R T E D |
| pitt | Mac OS X Tiger (10.4.11) / i386 | N O T S U P P O R T E D |
| pelham | Mac OS X Leopard (10.5.8) / i386 | N O T S U P P O R T E D |
* checking for working pdflatex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.4-bioc/meat/RWebServices.Rcheck'
* using R version 2.9.2 (2009-08-24)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'RWebServices/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'RWebServices' version '1.8.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'RWebServices' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
.getExtendsClass: no visible binding for global variable 'rClass'
generateDataMap : updateLookup_extends: no visible binding for global
variable 'rClass'
* checking Rd files ... OK
* checking Rd files against version 2 parser ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $BLAS_LIBS ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK
* Installing *source* package 'RWebServices' ...
Guessing SJava home: /loc/home/biocbuild/bbs-2.4-bioc/meat/RWebServices.Rcheck/SJava
checking Java support in R... configure: creating ./config.status
config.status: creating inst/scripts/RWebServicesEnv.properties
config.status: creating src/Makevars
** libs
gcc -std=gnu99 -I/home/biocbuild/bbs-2.4-bioc/R/include -I/usr/lib64/jvm/java/include -I/usr/lib64/jvm/java/include/linux -I/usr/local/include -fpic -g -O2 -Wall -c RWebServicesConverters.c -o RWebServicesConverters.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.4-bioc/R/include -I/usr/lib64/jvm/java/include -I/usr/lib64/jvm/java/include/linux -I/usr/local/include -fpic -g -O2 -Wall -c init.c -o init.o
gcc -std=gnu99 -shared -L/usr/local/lib64 -o RWebServices.so RWebServicesConverters.o init.o -L/usr/lib64/jvm/java-1.6.0-sun-1.6.0/jre/lib/amd64/server -L/usr/lib64/jvm/java-1.6.0-sun-1.6.0/jre/lib/amd64 -L/usr/lib64/jvm/java-1.6.0-sun-1.6.0/jre/../lib/amd64 -L/usr/local/lib64 -L/usr/local/lib/root -L -L/usr/java/packages/lib/amd64 -L/lib -L/usr/lib -ljvm -L/home/biocbuild/bbs-2.4-bioc/R/lib -lR
/usr/lib64/gcc/x86_64-suse-linux/4.3/../../../../x86_64-suse-linux/bin/ld: skipping incompatible /usr/lib/libc.so when searching for -lc
/usr/lib64/gcc/x86_64-suse-linux/4.3/../../../../x86_64-suse-linux/bin/ld: skipping incompatible /usr/lib/libc.a when searching for -lc
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
>>> Building/Updating help pages for package 'RWebServices'
Formats: text html latex example
ArrayAndMatrix-class text html latex example
FileReferences-class text html latex example
FileReferences text html latex example
RJavaPkgFunctions-class text html latex example
RJavaSignature-class text html latex example
RWebServices.package text html latex
SinkOutput-class text html latex example
converters text html latex
createMap text html latex example
generateDataMap text html latex example
generateDataTest text html latex example
generateFunctionMap text html latex example
getRSessionInfo text html latex example
importDataCvt text html latex
printLookup text html latex example
retrieve text html latex example
sinkSetup text html latex example
testUtils text html latex
typeInfo2Java text html latex example
unpackAntScript text html latex example
** building package indices ...
* DONE (RWebServices)