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Package 260/319HostnameOS / ArchBUILDCHECKBUILD BIN
RMAGEML 2.18.0
Steffen Durinck
Bioconductor Changelog
Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/RMAGEML
Last Changed Rev: 39013 / Revision: 42512
Last Changed Date: 2009-04-20 16:24:12 -0700 (Mon, 20 Apr 2009)
wilson1 Linux (openSUSE 11.1) / x86_64 [ OK ] OK 
liverpool Windows Server 2003 R2 (32-bit) / x64 N O T   S U P P O R T E D
pitt Mac OS X Tiger (10.4.11) / i386 N O T   S U P P O R T E D
pelham Mac OS X Leopard (10.5.8) / i386 N O T   S U P P O R T E D
Package: RMAGEML
Version: 2.18.0
Command: /home/biocbuild/bbs-2.4-bioc/R/bin/R CMD build RMAGEML
StartedAt: 2009-10-20 13:23:16 -0700 (Tue, 20 Oct 2009)
EndedAt: 2009-10-20 13:23:28 -0700 (Tue, 20 Oct 2009)
EllapsedTime: 12.5 seconds
RetCode: 0
Status: OK
PackageFile: RMAGEML_2.18.0.tar.gz
PackageFileSize: 4.689 MiB

Command output

* checking for file 'RMAGEML/DESCRIPTION' ... OK
* preparing 'RMAGEML':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
* Installing *source* package 'RMAGEML' ...
configure: creating ./config.status
config.status: creating src/Makevars
** libs
gcc -std=gnu99 -I/home/biocbuild/bbs-2.4-bioc/R/include -I/usr/lib64/jvm/java/include -I/usr/lib64/jvm/java/include/linux  -I/usr/local/include    -fpic  -g -O2 -Wall -c rmageml.c -o rmageml.o
rmageml.c: In function 'updateMAGEML':
rmageml.c:599: warning: cast from pointer to integer of different size
rmageml.c: In function 'destroyOM':
rmageml.c:95: warning: control reaches end of non-void function
rmageml.c: At top level:
rmageml.c:17: warning: 'JavaMethod_type_tag' defined but not used
gcc -std=gnu99 -shared -L/usr/local/lib64 -o RMAGEML.so rmageml.o -L/usr/lib64/jvm/java/jre/lib/amd64 -L/usr/lib64/jvm/java/jre/lib/i386 -ljava -L/usr/lib64/jvm/java/jre/lib/amd64/server -L/usr/lib64/jvm/java/jre/lib/i386/client -ljvm -L/home/biocbuild/bbs-2.4-bioc/R/lib -lR
** R
** inst
** preparing package for lazy loading
Loading required package: limma

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

** help
*** installing help indices
 >>> Building/Updating help pages for package 'RMAGEML'
     Formats: text html latex example 
  JavaVMRef-class                   text    html    latex
  MEXP14                            text    html    latex
  addDerivedData                    text    html    latex   example
  addNormToMAGEML                   text    html    latex   example
  getArrayID                        text    html    latex   example
  getArrayLayout                    text    html    latex   example
  getArrayLayoutLimma               text    html    latex   example
  getGnames                         text    html    latex   example
  getNumberOfFeatures               text    html    latex   example
  getOrganization                   text    html    latex   example
  getQTDimensions                   text    html    latex   example
  getQTypeDescription               text    html    latex   example
  getQuantitationTypes              text    html    latex   example
  getSubmitterAddress               text    html    latex   example
  importMAGEML                      text    html    latex   example
  importMAGEOM                      text    html    latex   example
  makeEset                          text    html    latex   example
  makeMarrayRaw                     text    html    latex   example
  makeRG                            text    html    latex   example
  reset                             text    html    latex   example
  writeMAGEML                       text    html    latex   example
** building package indices ...
* DONE (RMAGEML)
* creating vignettes ... OK
* cleaning src
make: Nothing to be done for `clean'.
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'RMAGEML_2.18.0.tar.gz'