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Package 142/319HostnameOS / ArchBUILDCHECKBUILD BIN
Harshlight 1.14.0
Maurizio Pellegrino
Bioconductor Changelog
Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/Harshlight
Last Changed Rev: 39013 / Revision: 42512
Last Changed Date: 2009-04-20 16:24:12 -0700 (Mon, 20 Apr 2009)
wilson1 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK [ OK ]
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
Package: Harshlight
Version: 1.14.0
Command: E:\biocbld\bbs-2.4-bioc\R\bin\R.exe CMD INSTALL --build --library=Harshlight.buildbin-libdir Harshlight_1.14.0.tar.gz
StartedAt: 2009-10-20 19:02:35 -0700 (Tue, 20 Oct 2009)
EndedAt: 2009-10-20 19:02:53 -0700 (Tue, 20 Oct 2009)
EllapsedTime: 17.3 seconds
RetCode: 0
Status: OK
PackageFile: Harshlight_1.14.0.zip
PackageFileSize: 388.9 KiB

Command output

* Installing *source* package 'Harshlight' ...

  Using auto-selected zip options '--use-zip-data '

** libs
  making DLL ...
gcc -I"E:/biocbld/bbs-2.4-bioc/R/include"        -O3 -Wall  -std=gnu99 -c Harshlight.c -o Harshlight.o
Harshlight.c:157: warning: C99 inline functions are not supported; using GNU89
Harshlight.c:157: warning: to disable this warning use -fgnu89-inline or the gnu_inline function attribute
Harshlight.c: In function 'norm':
Harshlight.c:1316: warning: unused variable 'sorted2'
Harshlight.c: In function 'report_overall_header':
Harshlight.c:1467: warning: unknown conversion type character ')' in format
Harshlight.c:1471: warning: unknown conversion type character ')' in format
Harshlight.c:1474: warning: unknown conversion type character ')' in format
Harshlight.c: In function 'chip_summary':
Harshlight.c:1532: warning: unknown conversion type character ')' in format
Harshlight.c:1542: warning: unknown conversion type character ')' in format
Harshlight.c:1543: warning: unknown conversion type character ')' in format
Harshlight.c: In function 'extended_stop':
Harshlight.c:1555: warning: unknown conversion type character ')' in format
gcc -shared -s -o Harshlight.dll tmp.def Harshlight.o -LE:/biocbld/bbs-2.4-bioc/R/bin -lR
  ... done
** R
** data
** inst
** preparing package for lazy loading
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: matchprobes
Loading required package: AnnotationDbi
Loading required package: Biostrings
Loading required package: IRanges

Attaching package: 'IRanges'


	The following object(s) are masked from package:base :

	 cbind,
	 duplicated,
	 order,
	 pmax,
	 pmax.int,
	 pmin,
	 pmin.int,
	 rank,
	 rbind,
	 rep.int,
	 sapply,
	 sort,
	 table,
	 unique 


*** Deprecation warning ***
The matchprobes package is deprecated and will not be supported
anymore starting with Bioconductor 2.4. Please switch to using the
Biostrings package for efficient string manipulations. If you need
to build a probe package, please see the makeProbePackage vignette
in the AnnotationDbi package.

Loading required package: makecdfenv
Loading required package: affyio
Loading required package: hypergraph
Loading required package: graph

Attaching package: 'graph'


	The following object(s) are masked from package:Biostrings :

	 complement 


Attaching package: 'hypergraph'


	The following object(s) are masked from package:IRanges :

	 head,
	 tail 


	The following object(s) are masked from package:AnnotationDbi :

	 head,
	 tail 


	The following object(s) are masked from package:utils :

	 head,
	 tail 

** help
*** installing help indices
 >>> Building/Updating help pages for package 'Harshlight'
     Formats: text html latex example chm 
  HarshComp                         text    html    latex           chm
  HarshExt                          text    html    latex           chm
  Harshlight                        text    html    latex   example chm
  sim                               text    html    latex           chm
Microsoft HTML Help Compiler 4.74.8702



Compiling e:\biocbld\bbs-2.4-bioc\tmpdir\Rtmpt2JGHj\R.INSTALL678418be\Harshlight\chm\Harshlight.chm





Compile time: 0 minutes, 2 seconds

5	Topics

12	Local links

3	Internet links

1	Graphic





Created e:\biocbld\bbs-2.4-bioc\tmpdir\Rtmpt2JGHj\R.INSTALL678418be\Harshlight\chm\Harshlight.chm, 24,811 bytes

Compression decreased file by 2,254 bytes.

** building package indices ...
** MD5 sums
packaged installation of 'Harshlight' as Harshlight_1.14.0.zip
* DONE (Harshlight)