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Package 138/319HostnameOS / ArchBUILDCHECKBUILD BIN
GraphAlignment 1.6.0
Joern P. Meier
Bioconductor Changelog
Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/GraphAlignment
Last Changed Rev: 39013 / Revision: 42512
Last Changed Date: 2009-04-20 16:24:12 -0700 (Mon, 20 Apr 2009)
wilson1 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK [ OK ]
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
Package: GraphAlignment
Version: 1.6.0
Command: E:\biocbld\bbs-2.4-bioc\R\bin\R.exe CMD INSTALL --build --library=GraphAlignment.buildbin-libdir GraphAlignment_1.6.0.tar.gz
StartedAt: 2009-10-20 19:02:13 -0700 (Tue, 20 Oct 2009)
EndedAt: 2009-10-20 19:02:26 -0700 (Tue, 20 Oct 2009)
EllapsedTime: 13.1 seconds
RetCode: 0
Status: OK
PackageFile: GraphAlignment_1.6.0.zip
PackageFileSize: 424.9 KiB

Command output

* Installing *source* package 'GraphAlignment' ...

  Using auto-selected zip options ''

** libs
  making DLL ...
gcc -I"E:/biocbld/bbs-2.4-bioc/R/include"        -O3 -Wall  -std=gnu99 -c GA_alloc.c -o GA_alloc.o
gcc -I"E:/biocbld/bbs-2.4-bioc/R/include"        -O3 -Wall  -std=gnu99 -c GA_matrix.c -o GA_matrix.o
gcc -I"E:/biocbld/bbs-2.4-bioc/R/include"        -O3 -Wall  -std=gnu99 -c GA_matrix_R.c -o GA_matrix_R.o
gcc -I"E:/biocbld/bbs-2.4-bioc/R/include"        -O3 -Wall  -std=gnu99 -c GA_message.c -o GA_message.o
gcc -I"E:/biocbld/bbs-2.4-bioc/R/include"        -O3 -Wall  -std=gnu99 -c GA_vector.c -o GA_vector.o
gcc -I"E:/biocbld/bbs-2.4-bioc/R/include"        -O3 -Wall  -std=gnu99 -c GA_vector_R.c -o GA_vector_R.o
GA_vector_R.c: In function 'GA_clamp_mode_from_R':
GA_vector_R.c:139: warning: unused variable 'size'
gcc -I"E:/biocbld/bbs-2.4-bioc/R/include"        -O3 -Wall  -std=gnu99 -c GraphAlignment.c -o GraphAlignment.o
GraphAlignment.c: In function 'GA_encode_directed_graph':
GraphAlignment.c:138: warning: suggest explicit braces to avoid ambiguous 'else'
GraphAlignment.c:159: warning: suggest explicit braces to avoid ambiguous 'else'
GraphAlignment.c: In function 'GA_directed_mode_from_R':
GraphAlignment.c:264: warning: unused variable 'size'
gcc -I"E:/biocbld/bbs-2.4-bioc/R/include"        -O3 -Wall  -std=gnu99 -c lap.c -o lap.o
lap.c: In function 'LAP_lap':
lap.c:65: warning: 'min' may be used uninitialized in this function
lap.c:64: warning: 'last' may be used uninitialized in this function
gcc -shared -s -o GraphAlignment.dll tmp.def GA_alloc.o GA_matrix.o GA_matrix_R.o GA_message.o GA_vector.o GA_vector_R.o GraphAlignment.o lap.o -LE:/biocbld/bbs-2.4-bioc/R/bin -lR
  ... done
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
 >>> Building/Updating help pages for package 'GraphAlignment'
     Formats: text html latex example chm 
  AlignNetworks                     text    html    latex   example chm
  AlignedPairs                      text    html    latex   example chm
  AnalyzeAlignment                  text    html    latex   example chm
  ComputeLinkParameters             text    html    latex   example chm
  ComputeM                          text    html    latex   example chm
  ComputeNodeParameters             text    html    latex   example chm
  ComputeScores                     text    html    latex   example chm
  CreateScoreMatrix                 text    html    latex   example chm
  EncodeDirectedGraph               text    html    latex   example chm
  GenerateExample                   text    html    latex   example chm
  GetBinNumber                      text    html    latex   example chm
  InitialAlignment                  text    html    latex   example chm
  InvertPermutation                 text    html    latex   example chm
  LinearAssignment                  text    html    latex   example chm
  MatrixToBin                       text    html    latex   example chm
  Permute                           text    html    latex   example chm
  Trace                             text    html    latex   example chm
  VectorToBin                       text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702



Compiling e:\biocbld\bbs-2.4-bioc\tmpdir\RtmpXyzKlL\R.INSTALL678418be\GraphAlignment\chm\GraphAlignment.chm





Compile time: 0 minutes, 0 seconds

19	Topics

75	Local links

0	Internet links

1	Graphic





Created e:\biocbld\bbs-2.4-bioc\tmpdir\RtmpXyzKlL\R.INSTALL678418be\GraphAlignment\chm\GraphAlignment.chm, 32,337 bytes

Compression decreased file by 26,265 bytes.

** building package indices ...
** MD5 sums
packaged installation of 'GraphAlignment' as GraphAlignment_1.6.0.zip
* DONE (GraphAlignment)