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Package 123/319HostnameOS / ArchBUILDCHECKBUILD BIN
GenomeGraphs 1.4.1
Steffen Durinck
Bioconductor Changelog
Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/GenomeGraphs
Last Changed Rev: 40127 / Revision: 42512
Last Changed Date: 2009-06-14 19:45:08 -0700 (Sun, 14 Jun 2009)
wilson1 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK [ OK ] OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
Package: GenomeGraphs
Version: 1.4.1
Command: /Library/Frameworks/R.framework/Versions/2.9/Resources/bin/R CMD check --no-vignettes GenomeGraphs_1.4.1.tar.gz
StartedAt: 2009-10-20 17:41:47 -0700 (Tue, 20 Oct 2009)
EndedAt: 2009-10-20 17:43:01 -0700 (Tue, 20 Oct 2009)
EllapsedTime: 73.5 seconds
RetCode: 0
Status: OK
CheckDir: GenomeGraphs.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory '/Users/biocbuild/bbs-2.4-bioc/meat/GenomeGraphs.Rcheck'
* using R version 2.9.2 Patched (2009-08-24 r49419)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'GenomeGraphs/DESCRIPTION' ... OK
* this is package 'GenomeGraphs' version '1.4.1'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'GenomeGraphs' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd files against version 2 parser ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

GenomeGraphs.Rcheck/00install.out:

* Installing *source* package ‘GenomeGraphs’ ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
 >>> Building/Updating help pages for package 'GenomeGraphs'
     Formats: text html latex example 
  AnnotationTrack-class             text    html    latex   example
  BaseTrack-class                   text    html    latex   example
  DisplayPars-class                 text    html    latex   example
  DisplayPars                       text    html    latex   example
  ExonArray-class                   text    html    latex   example
  Gene-class                        text    html    latex   example
  GeneModel-class                   text    html    latex   example
  GeneRegion-class                  text    html    latex   example
  GenericArray-class                text    html    latex   example
  GenomeAxis-class                  text    html    latex   example
  HighlightRegion-class             text    html    latex   example
  Ideogram-class                    text    html    latex   example
  Legend-class                      text    html    latex   example
  MappedRead-class                  text    html    latex   example
  Overlay-class                     text    html    latex   example
  RectangleOverlay-class            text    html    latex   example
  Segmentable-class                 text    html    latex   example
  Segmentation-class                text    html    latex   example
  TextOverlay-class                 text    html    latex   example
  Title-class                       text    html    latex   example
  Transcript-class                  text    html    latex   example
  TranscriptRegion-class            text    html    latex   example
  cn                                text    html    latex   example
Note: removing empty section \examples in file 'drawGD.Rd'
  drawGD                            text    html    latex
  exonProbePos                      text    html    latex   example
  gdObject-class                    text    html    latex   example
  gdPlot                            text    html    latex   example
Note: removing empty section \examples in file 'geneBiomart.Rd'
  geneBiomart                       text    html    latex
Note: removing empty section \examples in file 'geneRegionBiomart.Rd'
  geneRegionBiomart                 text    html    latex
  getPar                            text    html    latex   example
Note: removing empty section \references in file 'ideogramTab.Rd'
  ideogramTab                       text    html    latex   example
  intensity                         text    html    latex   example
Note: removing empty section \details in file 'makeAnnotationTrack.Rd'
  makeAnnotationTrack               text    html    latex   example
  makeBaseTrack                     text    html    latex   example
  makeExonArray                     text    html    latex   example
  makeGene                          text    html    latex   example
  makeGeneModel                     text    html    latex   example
  makeGeneRegion                    text    html    latex   example
  makeGenericArray                  text    html    latex   example
  makeGenomeAxis                    text    html    latex   example
Note: removing empty section \details in file 'makeIdeogram.Rd'
  makeIdeogram                      text    html    latex   example
  makeLegend                        text    html    latex   example
  makeRectangleOverlay              text    html    latex   example
  makeSegmentation                  text    html    latex   example
  makeTextOverlay                   text    html    latex   example
  makeTitle                         text    html    latex   example
  makeTranscript                    text    html    latex   example
  probestart                        text    html    latex   example
  segEnd                            text    html    latex   example
  segStart                          text    html    latex   example
  segments                          text    html    latex   example
Note: removing empty section \source in file 'seqDataEx.Rd'
  seqDataEx                         text    html    latex   example
  setPar                            text    html    latex   example
  showDisplayOptions                text    html    latex   example
  unrData                           text    html    latex   example
  unrNProbes                        text    html    latex   example
  unrPositions                      text    html    latex   example
  yeastCons1                        text    html    latex   example
** building package indices ...
* DONE (GenomeGraphs)