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Package 121/319HostnameOS / ArchBUILDCHECKBUILD BIN
GeneticsPed 1.6.0
The R Genetics Project
Bioconductor Changelog
Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/GeneticsPed
Last Changed Rev: 39013 / Revision: 42512
Last Changed Date: 2009-04-20 16:24:12 -0700 (Mon, 20 Apr 2009)
wilson1 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK [ OK ]
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
Package: GeneticsPed
Version: 1.6.0
Command: E:\biocbld\bbs-2.4-bioc\R\bin\R.exe CMD INSTALL --build --library=GeneticsPed.buildbin-libdir GeneticsPed_1.6.0.tar.gz
StartedAt: 2009-10-20 19:00:05 -0700 (Tue, 20 Oct 2009)
EndedAt: 2009-10-20 19:00:27 -0700 (Tue, 20 Oct 2009)
EllapsedTime: 22.2 seconds
RetCode: 0
Status: OK
PackageFile: GeneticsPed_1.6.0.zip
PackageFileSize: 693.8 KiB

Command output

* Installing *source* package 'GeneticsPed' ...

  Using auto-selected zip options '--use-zip-help'

** libs
  making DLL ...
g++ -I"E:/biocbld/bbs-2.4-bioc/R/include"        -O2 -Wall  -c ainverse.cc -o ainverse.o
g++ -I"E:/biocbld/bbs-2.4-bioc/R/include"        -O2 -Wall  -c eibd.cc -o eibd.o
gfortran     -O3  -c ggmatmult.f -o ggmatmult.o
gfortran     -O3  -c gpi.f -o gpi.o
g++ -I"E:/biocbld/bbs-2.4-bioc/R/include"        -O2 -Wall  -c inbreed.cc -o inbreed.o
g++ -I"E:/biocbld/bbs-2.4-bioc/R/include"        -O2 -Wall  -c inverseAdditive.cc -o inverseAdditive.o
g++ -I"E:/biocbld/bbs-2.4-bioc/R/include"        -O2 -Wall  -c meuwissen.cc -o meuwissen.o
g++ -I"E:/biocbld/bbs-2.4-bioc/R/include"        -O2 -Wall  -c pedSort.cc -o pedSort.o
g++ -I"E:/biocbld/bbs-2.4-bioc/R/include"        -O2 -Wall  -c pedtemplate.cc -o pedtemplate.o
g++ -I"E:/biocbld/bbs-2.4-bioc/R/include"        -O2 -Wall  -c register.cc -o register.o
gcc -I"E:/biocbld/bbs-2.4-bioc/R/include"        -O3 -Wall  -std=gnu99 -c sargolzaei.c -o sargolzaei.o
sargolzaei.c: In function 'sargolzaei':
sargolzaei.c:96: warning: comparison between pointer and integer
sargolzaei.c:19: warning: 'S' may be used uninitialized in this function
sargolzaei.c:19: warning: 'MIP' may be used uninitialized in this function
g++ -I"E:/biocbld/bbs-2.4-bioc/R/include"        -O2 -Wall  -c sortped.cc -o sortped.o
g++ -shared -s -o GeneticsPed.dll tmp.def ainverse.o eibd.o ggmatmult.o gpi.o inbreed.o inverseAdditive.o meuwissen.o pedSort.o pedtemplate.o register.o sargolzaei.o sortped.o -lgfortran -LE:/biocbld/bbs-2.4-bioc/R/bin -lR
  ... done
** R
** data
** inst
** preparing package for lazy loading

Attaching package: 'gdata'


	The following object(s) are masked from package:utils :

	 object.size 

Loading required package: combinat

Attaching package: 'combinat'


	The following object(s) are masked from package:utils :

	 combn 

Loading required package: gtools
Loading required package: MASS
Loading required package: mvtnorm

NOTE: THIS PACKAGE IS NOW OBSOLETE.

  The R-Genetics project has developed an set of enhanced genetics
  packages to replace 'genetics'. Please visit the project homepage
  at http://rgenetics.org for informtion.


Attaching package: 'genetics'


	The following object(s) are masked from package:base :

	 %in%,
	 as.factor,
	 order 

** help
*** installing help indices
 >>> Building/Updating help pages for package 'GeneticsPed'
     Formats: text html latex example chm 
  TDT                               text    html    latex   example chm
  check                             text    html    latex   example chm
  datasets                          text    html    latex   example chm
  extend                            text    html    latex   example chm
  family                            text    html    latex   example chm
  founder                           text    html    latex   example chm
  geneContribution                  text    html    latex   example chm
  generatePedigree                  text    html    latex   example chm
  generation                        text    html    latex   example chm
  gpi                               text    html    latex   example chm
  gpiUtil                           text    html    latex   example chm
  inbreeding                        text    html    latex   example chm
  model.matrix                      text    html    latex   example chm
  nIndividual                       text    html    latex   example chm
  pedigree                          text    html    latex   example chm
  prune                             text    html    latex   example chm
  relationshipAdditive              text    html    latex   example chm
  removeIndividual                  text    html    latex   example chm
  sort.pedigree                     text    html    latex   example chm
  summary.pedigree                  text    html    latex   example chm
  undocumented                      text    html    latex           chm
Microsoft HTML Help Compiler 4.74.8702



Compiling e:\biocbld\bbs-2.4-bioc\tmpdir\RtmpvqRWOH\R.INSTALL678418be\GeneticsPed\chm\GeneticsPed.chm





Compile time: 0 minutes, 1 second

22	Topics

109	Local links

13	Internet links

1	Graphic





Created e:\biocbld\bbs-2.4-bioc\tmpdir\RtmpvqRWOH\R.INSTALL678418be\GeneticsPed\chm\GeneticsPed.chm, 55,812 bytes

Compression decreased file by 47,298 bytes.

** building package indices ...
** MD5 sums
packaged installation of 'GeneticsPed' as GeneticsPed_1.6.0.zip
* DONE (GeneticsPed)