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Package 112/319HostnameOS / ArchBUILDCHECKBUILD BIN
GeneR 2.14.0
Y. d'Aubenton-Carafa
Bioconductor Changelog
Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/GeneR
Last Changed Rev: 39013 / Revision: 42512
Last Changed Date: 2009-04-20 16:24:12 -0700 (Mon, 20 Apr 2009)
wilson1 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64 [ OK ] OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
Package: GeneR
Version: 2.14.0
Command: E:\biocbld\bbs-2.4-bioc\R\bin\R.exe CMD build GeneR
StartedAt: 2009-10-20 14:18:01 -0700 (Tue, 20 Oct 2009)
EndedAt: 2009-10-20 14:18:35 -0700 (Tue, 20 Oct 2009)
EllapsedTime: 33.3 seconds
RetCode: 0
Status: OK
PackageFile: GeneR_2.14.0.tar.gz
PackageFileSize: 232.1 KiB

Command output

* checking for file 'GeneR/DESCRIPTION' ... OK
* preparing 'GeneR':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
* Installing *source* package 'GeneR' ...
** libs
  making DLL ...
g++ -I"e:/biocbld/bbs-2.4-bioc/R/include"        -O2 -Wall  -c GeneR_glob.cc -o GeneR_glob.o
g++ -I"e:/biocbld/bbs-2.4-bioc/R/include"        -O2 -Wall  -c GeneR_seq.cc -o GeneR_seq.o
g++ -I"e:/biocbld/bbs-2.4-bioc/R/include"        -O2 -Wall  -c complementaire.cc -o complementaire.o
g++ -I"e:/biocbld/bbs-2.4-bioc/R/include"        -O2 -Wall  -c compoSeq.cc -o compoSeq.o
g++ -I"e:/biocbld/bbs-2.4-bioc/R/include"        -O2 -Wall  -c dnaRna.cc -o dnaRna.o
g++ -I"e:/biocbld/bbs-2.4-bioc/R/include"        -O2 -Wall  -c libIndex.cc -o libIndex.o
g++ -I"e:/biocbld/bbs-2.4-bioc/R/include"        -O2 -Wall  -c libStrings.cc -o libStrings.o
g++ -I"e:/biocbld/bbs-2.4-bioc/R/include"        -O2 -Wall  -c makeIndex.cc -o makeIndex.o
g++ -I"e:/biocbld/bbs-2.4-bioc/R/include"        -O2 -Wall  -c masked.cc -o masked.o
g++ -I"e:/biocbld/bbs-2.4-bioc/R/include"        -O2 -Wall  -c misc.cc -o misc.o
misc.cc: In function 'SEXPREC* str_to_nbstr(SEXPREC*, SEXPREC*)':
misc.cc:31: warning: 'multiple' may be used uninitialized in this function
misc.cc:30: warning: 'ans' may be used uninitialized in this function
g++ -I"e:/biocbld/bbs-2.4-bioc/R/include"        -O2 -Wall  -c readEmblDescript.cc -o readEmblDescript.o
g++ -I"e:/biocbld/bbs-2.4-bioc/R/include"        -O2 -Wall  -c readIndex.cc -o readIndex.o
g++ -I"e:/biocbld/bbs-2.4-bioc/R/include"        -O2 -Wall  -c readLocation.cc -o readLocation.o
g++ -I"e:/biocbld/bbs-2.4-bioc/R/include"        -O2 -Wall  -c readSeqEmbl.cc -o readSeqEmbl.o
g++ -I"e:/biocbld/bbs-2.4-bioc/R/include"        -O2 -Wall  -c readSeqFasta.cc -o readSeqFasta.o
g++ -I"e:/biocbld/bbs-2.4-bioc/R/include"        -O2 -Wall  -c readSeqGbk.cc -o readSeqGbk.o
g++ -I"e:/biocbld/bbs-2.4-bioc/R/include"        -O2 -Wall  -c seqManip.cc -o seqManip.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include"        -O3 -Wall  -std=gnu99 -c strcasestr.c -o strcasestr.o
g++ -I"e:/biocbld/bbs-2.4-bioc/R/include"        -O2 -Wall  -c translate.cc -o translate.o
g++ -I"e:/biocbld/bbs-2.4-bioc/R/include"        -O2 -Wall  -c upperSeq.cc -o upperSeq.o
g++ -I"e:/biocbld/bbs-2.4-bioc/R/include"        -O2 -Wall  -c vecteurs.cc -o vecteurs.o
g++ -I"e:/biocbld/bbs-2.4-bioc/R/include"        -O2 -Wall  -c writeFasta.cc -o writeFasta.o
g++ -shared -s -o GeneR.dll tmp.def GeneR_glob.o GeneR_seq.o complementaire.o compoSeq.o dnaRna.o libIndex.o libStrings.o makeIndex.o masked.o misc.o readEmblDescript.o readIndex.o readLocation.o readSeqEmbl.o readSeqFasta.o readSeqGbk.o seqManip.o strcasestr.o translate.o upperSeq.o vecteurs.o writeFasta.o -Le:/biocbld/bbs-2.4-bioc/R/bin -lR
  ... done
** R
** demo
** inst
** preparing package for lazy loading
** help
*** installing help indices
 >>> Building/Updating help pages for package 'GeneR'
     Formats: text html latex example chm 
  01GeneR                           text    html    latex   example chm
  02globalSeg                       text    html    latex   example chm
  02globals                         text    html    latex   example chm
  Allorf                            text    html    latex   example chm
  AtoR                              text    html    latex   example chm
  Match                             text    html    latex   example chm
  Xor.globalSeg                     text    html    latex   example chm
  Xor.segSet                        text    html    latex   example chm
  and.globalSeg                     text    html    latex   example chm
  and.segSet                        text    html    latex   example chm
  appendSeq                         text    html    latex   example chm
  as.globalSeg                      text    html    latex           chm
  as.segSet                         text    html    latex           chm
  assemble                          text    html    latex   example chm
  bankDensityProfile                text    html    latex   example chm
  bankSummary                       text    html    latex   example chm
  compos.seq                        text    html    latex   example chm
  concat                            text    html    latex   example chm
  deleteCR                          text    html    latex   example chm
  densityProfile                    text    html    latex   example chm
  dna.rna                           text    html    latex   example chm
  exact.word                        text    html    latex   example chm
  fasta.descript                    text    html    latex   example chm
  free.seq                          text    html    latex   example chm
  getAccn                           text    html    latex           chm
  getParam                          text    html    latex           chm
  getseq                            text    html    latex   example chm
  indexfasta                        text    html    latex           chm
  insert                            text    html    latex   example chm
  lower                             text    html    latex   example chm
  makeIndex                         text    html    latex   example chm
  mask                              text    html    latex   example chm
  not.globalSeg                     text    html    latex   example chm
  not.segSet                        text    html    latex   example chm
  or.globalSeg                      text    html    latex   example chm
  or.segSet                         text    html    latex   example chm
  placestring                       text    html    latex   example chm
  plot.globalSeg                    text    html    latex   example chm
  posMaskedSeq                      text    html    latex   example chm
  randomSeq                         text    html    latex   example chm
  read.gbk.location                 text    html    latex   example chm
  readEmblDescript                  text    html    latex   example chm
  readseq                           text    html    latex   example chm
  relist                            text    html    latex   example chm
  revcomp                           text    html    latex   example chm
  seqSkew                           text    html    latex   example chm
  sequrl                            text    html    latex   example chm
  setAccn                           text    html    latex           chm
  setParam                          text    html    latex           chm
  size.globalSeg                    text    html    latex   example chm
  sizeseq                           text    html    latex   example chm
  sizeseqfasta                      text    html    latex   example chm
  sliceSegment                      text    html    latex   example chm
  translation                       text    html    latex   example chm
  write.fasta                       text    html    latex   example chm
  writeEMBL                         text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702



Compiling e:\biocbld\bbs-2.4-bioc\meat\GeneR\chm\GeneR.chm





Compile time: 0 minutes, 1 second

57	Topics

329	Local links

0	Internet links

1	Graphic





Created e:\biocbld\bbs-2.4-bioc\meat\GeneR\chm\GeneR.chm, 78,076 bytes

Compression decreased file by 112,640 bytes.

** building package indices ...
** MD5 sums
* DONE (GeneR)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'GeneR_2.14.0.tar.gz'