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Package 38/319HostnameOS / ArchBUILDCHECKBUILD BIN
BGmix 1.4.0
Alex Lewin
Bioconductor Changelog
Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/BGmix
Last Changed Rev: 39013 / Revision: 42512
Last Changed Date: 2009-04-20 16:24:12 -0700 (Mon, 20 Apr 2009)
wilson1 Linux (openSUSE 11.1) / x86_64 [ OK ] OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
Package: BGmix
Version: 1.4.0
Command: /home/biocbuild/bbs-2.4-bioc/R/bin/R CMD build BGmix
StartedAt: 2009-10-20 14:30:04 -0700 (Tue, 20 Oct 2009)
EndedAt: 2009-10-20 14:30:29 -0700 (Tue, 20 Oct 2009)
EllapsedTime: 25.5 seconds
RetCode: 0
Status: OK
PackageFile: BGmix_1.4.0.tar.gz
PackageFileSize: 1.218 MiB

Command output

* checking for file 'BGmix/DESCRIPTION' ... OK
* preparing 'BGmix':
* checking DESCRIPTION meta-information ... OK
* cleaning src
make: Nothing to be done for `clean'.
* installing the package to re-build vignettes
* Installing *source* package 'BGmix' ...
checking for gcc... gcc -std=gnu99
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc -std=gnu99 accepts -g... yes
checking for gcc -std=gnu99 option to accept ISO C89... none needed
checking for gcc -std=gnu99 option to accept ISO C99... none needed
checking for cos in -lm... yes
Untarring Boost header files...
checking for an ANSI C-conforming const... yes
checking for inline... inline
configure: creating ./config.status
config.status: creating src/Makevars
** libs
g++ -I/home/biocbuild/bbs-2.4-bioc/R/include -I ../boostIncl -I/usr/local/include    -fpic  -g -O2 -Wall -DUSING_R -c BGmix_main.cpp -o BGmix_main.o
BGmix_main.cpp: In function 'void BGmix(int&, int&, int&, int&, int&, int&, int&, int&, int&, int&, int&, int&, int&, int&, int&, int&, int&, int&, int&, int&, int&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double*, double*, double*, int*, int&, double*, int*, char**, char**, char**, char**, char**)':
BGmix_main.cpp:165: warning: suggest parentheses around comparison in operand of &
BGmix_main.cpp:178: warning: suggest parentheses around comparison in operand of &
BGmix_main.cpp:179: warning: suggest parentheses around comparison in operand of &
BGmix_main.cpp:546: warning: suggest parentheses around comparison in operand of |
BGmix_main.cpp:621: warning: suggest parentheses around comparison in operand of |
g++ -I/home/biocbuild/bbs-2.4-bioc/R/include -I ../boostIncl -I/usr/local/include    -fpic  -g -O2 -Wall -DUSING_R -c rundir.cpp -o rundir.o
g++ -I/home/biocbuild/bbs-2.4-bioc/R/include -I ../boostIncl -I/usr/local/include    -fpic  -g -O2 -Wall -DUSING_R -c updates_BGmix.cpp -o updates_BGmix.o
updates_BGmix.cpp: In function 'void update_z_beta1_joint2(int*, double**, int*, int&, int&, double*, double&, double&, double**, double**, double**, int*, double**, double**, int&, int&, int&, int*, int&, int&, int&, Random&)':
updates_BGmix.cpp:192: warning: suggest parentheses around comparison in operand of |
updates_BGmix.cpp:200: warning: suggest parentheses around comparison in operand of |
updates_BGmix.cpp: In function 'void predict(double**, double**, double**, double**, double**, double**, double**, double**, double**, double**, double**, double**, double**, double*, double**, double*, double**, double**, double**, double**, double*, double*, int*, double**, double**, int*, double*, double&, double&, double&, double&, double&, int&, int&, int&, int&, int&, int*, int&, Random&)':
updates_BGmix.cpp:870: warning: suggest parentheses around comparison in operand of |
updates_BGmix.cpp:883: warning: suggest parentheses around comparison in operand of |
updates_BGmix.cpp:883: warning: suggest parentheses around comparison in operand of |
updates_BGmix.cpp:893: warning: suggest parentheses around comparison in operand of |
updates_BGmix.cpp: In function 'void predict_t(double**, double**, double**, double**, double**, double**, double**, double**, double**, double**, double**, double**, double**, double**, double**, double**, double*, double*, double*, int*, double**, double**, int*, double*, double&, double&, double&, double&, double&, int&, int&, int&, int&, int&, int*, int&, Random&)':
updates_BGmix.cpp:992: warning: suggest parentheses around comparison in operand of |
updates_BGmix.cpp:1005: warning: suggest parentheses around comparison in operand of |
updates_BGmix.cpp:1005: warning: suggest parentheses around comparison in operand of |
updates_BGmix.cpp:1015: warning: suggest parentheses around comparison in operand of |
g++ -shared -L/usr/local/lib64 -o BGmix.so BGmix_main.o rundir.o updates_BGmix.o -lm -L/home/biocbuild/bbs-2.4-bioc/R/lib -lR
rm -r ../boostIncl 
** R
** data
** inst
** preparing package for lazy loading
KernSmooth 2.23 loaded
Copyright M. P. Wand 1997-2009
** help
*** installing help indices
 >>> Building/Updating help pages for package 'BGmix'
     Formats: text html latex example 
  BGmix-package                     text    html    latex   example
  BGmix                             text    html    latex   example
  EstimatePi0                       text    html    latex   example
  FDRforTailPP                      text    html    latex   example
  FDRplotTailPP                     text    html    latex   example
  TailPP                            text    html    latex   example
  calcFDR                           text    html    latex   example
  ccParams                          text    html    latex   example
  ccPred                            text    html    latex   example
  ccSummary                         text    html    latex   example
  ccTrace                           text    html    latex   example
  histTailPP                        text    html    latex   example
  plotBasic                         text    html    latex   example
  plotCompare                       text    html    latex   example
  plotFDR                           text    html    latex   example
  plotMixDensity                    text    html    latex   example
  plotPredChecks                    text    html    latex   example
  plotTrace                         text    html    latex   example
  readBGX                           text    html    latex
  ss                                text    html    latex
  ybar                              text    html    latex
** building package indices ...
* DONE (BGmix)
* creating vignettes ... OK
* cleaning src
make: Nothing to be done for `clean'.
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'BGmix_1.4.0.tar.gz'