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Package 23/319HostnameOS / ArchBUILDCHECKBUILD BIN
AnnotationDbi 1.6.1
Biocore Team c/o BioC user list
Bioconductor Changelog
Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/AnnotationDbi
Last Changed Rev: 40135 / Revision: 42512
Last Changed Date: 2009-06-15 09:52:36 -0700 (Mon, 15 Jun 2009)
wilson1 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
Package: AnnotationDbi
Version: 1.6.1
Command: E:\biocbld\bbs-2.4-bioc\R\bin\R.exe CMD check --no-vignettes AnnotationDbi_1.6.1.tar.gz
StartedAt: 2009-10-20 16:08:21 -0700 (Tue, 20 Oct 2009)
EndedAt: 2009-10-20 16:13:27 -0700 (Tue, 20 Oct 2009)
EllapsedTime: 306.1 seconds
RetCode: 0
Status: OK
CheckDir: AnnotationDbi.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.4-bioc/meat/AnnotationDbi.Rcheck'
* using R version 2.9.2 (2009-08-24)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'AnnotationDbi/DESCRIPTION' ... OK
* this is package 'AnnotationDbi' version '1.6.1'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'AnnotationDbi' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd files against version 2 parser ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

AnnotationDbi.Rcheck/00install.out:

* Installing *source* package 'AnnotationDbi' ...
** R
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Creating a new generic function for "toString" in "AnnotationDbi"
Creating a new generic function for "rev" in "AnnotationDbi"
Creating a new generic function for "colnames" in "AnnotationDbi"
Creating a new generic function for "subset" in "AnnotationDbi"
Creating a new generic function for "head" in "AnnotationDbi"
Creating a new generic function for "tail" in "AnnotationDbi"
Creating a new generic function for "nrow" in "AnnotationDbi"
Creating a new generic function for "ncol" in "AnnotationDbi"
Creating a new generic function for "as.list" in "AnnotationDbi"
Creating a new generic function for "ls" in "AnnotationDbi"
Creating a new generic function for "mget" in "AnnotationDbi"
Creating a new generic function for "eapply" in "AnnotationDbi"
Creating a new generic function for "get" in "AnnotationDbi"
Creating a new generic function for "exists" in "AnnotationDbi"
Creating a new generic function for "sample" in "AnnotationDbi"
** help
*** installing help indices
 >>> Building/Updating help pages for package 'AnnotationDbi'
     Formats: text html latex example chm 
Note: removing empty section \value in file 'AnnDbBimap-envirAPI.Rd'
Note: removing empty section \value in file 'AnnDbBimap-envirAPI.Rd'
  AnnDbBimap-envirAPI               text    html    latex   example chm
  AnnDbObj-class                    text    html    latex   example chm
Note: removing empty section \details in file 'AnnDbPkg-checker.Rd'
Note: removing empty section \details in file 'AnnDbPkg-checker.Rd'
  AnnDbPkg-checker                  text    html    latex   example chm
Note: removing empty section \details in file 'AnnDbPkg-maker.Rd'
Note: removing empty section \details in file 'AnnDbPkg-maker.Rd'
  AnnDbPkg-maker                    text    html    latex   example chm
  AnnotationDbi-internals           text    html    latex           chm
  Bimap-direction                   text    html    latex   example chm
  Bimap-keys                        text    html    latex   example chm
  Bimap-toTable                     text    html    latex   example chm
  Bimap                             text    html    latex   example chm
Note: removing empty section \value in file 'BimapFormatting.Rd'
Note: removing empty section \value in file 'BimapFormatting.Rd'
  BimapFormatting                   text    html    latex   example chm
  GOTerms-class                     text    html    latex   example chm
  available.db0pkgs                 text    html    latex   example chm
  createSimpleBimap                 text    html    latex   example chm
  getProbeDataAffy                  text    html    latex   example chm
  getProbeData_1lq                  text    html    latex   example chm
  inpIDMapper                       text    html    latex   example chm
  makeProbePackage                  text    html    latex   example chm
  make_eg_to_go_map                 text    html    latex   example chm
  print.probetable                  text    html    latex   example chm
  sqlForge-makeARABIDOPSISCHIPDB    text    html    latex   example chm
  sqlForge-makeCHIPDB               text    html    latex   example chm
  sqlForge-makeYEASTDB              text    html    latex   example chm
  sqlForge-popARABIDOPSISCHIPDB     text    html    latex   example chm
  sqlForge-popCHIPDB                text    html    latex   example chm
  sqlForge-popDB                    text    html    latex   example chm
  sqlForge-popYEASTCHIPDB           text    html    latex   example chm
  sqlForge-wrapDBPackages           text    html    latex   example chm
  toSQLStringSet                    text    html    latex   example chm
  unlist2                           text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling e:\biocbld\BBS-2~1.4-B\meat\ANNOTA~2.RCH\00_PKG~1\ANNOTA~1\chm\AnnotationDbi.chm


Compile time: 0 minutes, 2 seconds
30	Topics
391	Local links
2	Internet links
1	Graphic


Created e:\biocbld\BBS-2~1.4-B\meat\ANNOTA~2.RCH\00_PKG~1\ANNOTA~1\chm\AnnotationDbi.chm, 78,942 bytes
Compression decreased file by 152,471 bytes.
** building package indices ...
** MD5 sums
* DONE (AnnotationDbi)