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Package 23/319HostnameOS / ArchBUILDCHECKBUILD BIN
AnnotationDbi 1.6.1
Biocore Team c/o BioC user list
Bioconductor Changelog
Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/AnnotationDbi
Last Changed Rev: 40135 / Revision: 42512
Last Changed Date: 2009-06-15 09:52:36 -0700 (Mon, 15 Jun 2009)
wilson1 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64 [ OK ] OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
Package: AnnotationDbi
Version: 1.6.1
Command: E:\biocbld\bbs-2.4-bioc\R\bin\R.exe CMD build AnnotationDbi
StartedAt: 2009-10-20 14:57:35 -0700 (Tue, 20 Oct 2009)
EndedAt: 2009-10-20 15:01:23 -0700 (Tue, 20 Oct 2009)
EllapsedTime: 227.9 seconds
RetCode: 0
Status: OK
PackageFile: AnnotationDbi_1.6.1.tar.gz
PackageFileSize: 3.554 MiB

Command output

* checking for file 'AnnotationDbi/DESCRIPTION' ... OK
* preparing 'AnnotationDbi':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
* Installing *source* package 'AnnotationDbi' ...
** R
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Creating a new generic function for "toString" in "AnnotationDbi"
Creating a new generic function for "rev" in "AnnotationDbi"
Creating a new generic function for "colnames" in "AnnotationDbi"
Creating a new generic function for "subset" in "AnnotationDbi"
Creating a new generic function for "head" in "AnnotationDbi"
Creating a new generic function for "tail" in "AnnotationDbi"
Creating a new generic function for "nrow" in "AnnotationDbi"
Creating a new generic function for "ncol" in "AnnotationDbi"
Creating a new generic function for "as.list" in "AnnotationDbi"
Creating a new generic function for "ls" in "AnnotationDbi"
Creating a new generic function for "mget" in "AnnotationDbi"
Creating a new generic function for "eapply" in "AnnotationDbi"
Creating a new generic function for "get" in "AnnotationDbi"
Creating a new generic function for "exists" in "AnnotationDbi"
Creating a new generic function for "sample" in "AnnotationDbi"
** help
*** installing help indices
 >>> Building/Updating help pages for package 'AnnotationDbi'
     Formats: text html latex example chm 
Note: removing empty section \value in file 'AnnDbBimap-envirAPI.Rd'
Note: removing empty section \value in file 'AnnDbBimap-envirAPI.Rd'
  AnnDbBimap-envirAPI               text    html    latex   example chm
  AnnDbObj-class                    text    html    latex   example chm
Note: removing empty section \details in file 'AnnDbPkg-checker.Rd'
Note: removing empty section \details in file 'AnnDbPkg-checker.Rd'
  AnnDbPkg-checker                  text    html    latex   example chm
Note: removing empty section \details in file 'AnnDbPkg-maker.Rd'
Note: removing empty section \details in file 'AnnDbPkg-maker.Rd'
  AnnDbPkg-maker                    text    html    latex   example chm
  AnnotationDbi-internals           text    html    latex           chm
  Bimap-direction                   text    html    latex   example chm
  Bimap-keys                        text    html    latex   example chm
  Bimap-toTable                     text    html    latex   example chm
  Bimap                             text    html    latex   example chm
Note: removing empty section \value in file 'BimapFormatting.Rd'
Note: removing empty section \value in file 'BimapFormatting.Rd'
  BimapFormatting                   text    html    latex   example chm
  GOTerms-class                     text    html    latex   example chm
  available.db0pkgs                 text    html    latex   example chm
  createSimpleBimap                 text    html    latex   example chm
  getProbeDataAffy                  text    html    latex   example chm
  getProbeData_1lq                  text    html    latex   example chm
  inpIDMapper                       text    html    latex   example chm
  makeProbePackage                  text    html    latex   example chm
  make_eg_to_go_map                 text    html    latex   example chm
  print.probetable                  text    html    latex   example chm
  sqlForge-makeARABIDOPSISCHIPDB    text    html    latex   example chm
  sqlForge-makeCHIPDB               text    html    latex   example chm
  sqlForge-makeYEASTDB              text    html    latex   example chm
  sqlForge-popARABIDOPSISCHIPDB     text    html    latex   example chm
  sqlForge-popCHIPDB                text    html    latex   example chm
  sqlForge-popDB                    text    html    latex   example chm
  sqlForge-popYEASTCHIPDB           text    html    latex   example chm
  sqlForge-wrapDBPackages           text    html    latex   example chm
  toSQLStringSet                    text    html    latex   example chm
  unlist2                           text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702



Compiling e:\biocbld\bbs-2.4-bioc\meat\AnnotationDbi\chm\AnnotationDbi.chm





Compile time: 0 minutes, 1 second

30	Topics

391	Local links

2	Internet links

1	Graphic





Created e:\biocbld\bbs-2.4-bioc\meat\AnnotationDbi\chm\AnnotationDbi.chm, 78,942 bytes

Compression decreased file by 152,471 bytes.

** building package indices ...
** MD5 sums
* DONE (AnnotationDbi)
* creating vignettes ... OK
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
WARNING: directory 'AnnotationDbi/inst/AnnDbPkg-templates/AFFYHUEX.DB/inst/extdata' is empty
WARNING: directory 'AnnotationDbi/inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/inst/extdata' is empty
WARNING: directory 'AnnotationDbi/inst/AnnDbPkg-templates/BASEPKG.DB/inst/extdata' is empty
WARNING: directory 'AnnotationDbi/inst/AnnDbPkg-templates/BOVINE.DB/inst/extdata' is empty
WARNING: directory 'AnnotationDbi/inst/AnnDbPkg-templates/BOVINECHIP.DB/inst/extdata' is empty
WARNING: directory 'AnnotationDbi/inst/AnnDbPkg-templates/CANINE.DB/inst/extdata' is empty
WARNING: directory 'AnnotationDbi/inst/AnnDbPkg-templates/CANINECHIP.DB/inst/extdata' is empty
WARNING: directory 'AnnotationDbi/inst/AnnDbPkg-templates/CHICKEN.DB/inst/extdata' is empty
WARNING: directory 'AnnotationDbi/inst/AnnDbPkg-templates/CHICKENCHIP.DB/inst/extdata' is empty
WARNING: directory 'AnnotationDbi/inst/AnnDbPkg-templates/ECOLI.DB/inst/extdata' is empty
WARNING: directory 'AnnotationDbi/inst/AnnDbPkg-templates/ECOLICHIP.DB/inst/extdata' is empty
WARNING: directory 'AnnotationDbi/inst/AnnDbPkg-templates/FLY.DB/inst/extdata' is empty
WARNING: directory 'AnnotationDbi/inst/AnnDbPkg-templates/FLYCHIP.DB/inst/extdata' is empty
WARNING: directory 'AnnotationDbi/inst/AnnDbPkg-templates/GO.DB/inst/extdata' is empty
WARNING: directory 'AnnotationDbi/inst/AnnDbPkg-templates/HUMAN.DB/inst/extdata' is empty
WARNING: directory 'AnnotationDbi/inst/AnnDbPkg-templates/HUMANCHIP.DB/inst/extdata' is empty
WARNING: directory 'AnnotationDbi/inst/AnnDbPkg-templates/HUMANCROSSCHIP.DB/inst/extdata' is empty
WARNING: directory 'AnnotationDbi/inst/AnnDbPkg-templates/INPARANOIDDROME.DB/inst/extdata' is empty
WARNING: directory 'AnnotationDbi/inst/AnnDbPkg-templates/INPARANOIDHOMSA.DB/inst/extdata' is empty
WARNING: directory 'AnnotationDbi/inst/AnnDbPkg-templates/INPARANOIDMUSMU.DB/inst/extdata' is empty
WARNING: directory 'AnnotationDbi/inst/AnnDbPkg-templates/INPARANOIDRATNO.DB/inst/extdata' is empty
WARNING: directory 'AnnotationDbi/inst/AnnDbPkg-templates/INPARANOIDSACCE.DB/inst/extdata' is empty
WARNING: directory 'AnnotationDbi/inst/AnnDbPkg-templates/KEGG.DB/inst/extdata' is empty
WARNING: directory 'AnnotationDbi/inst/AnnDbPkg-templates/MALARIA.DB/inst/extdata' is empty
WARNING: directory 'AnnotationDbi/inst/AnnDbPkg-templates/MOUSE.DB/inst/extdata' is empty
WARNING: directory 'AnnotationDbi/inst/AnnDbPkg-templates/MOUSECHIP.DB/inst/extdata' is empty
WARNING: directory 'AnnotationDbi/inst/AnnDbPkg-templates/PFAM.DB/inst/extdata' is empty
WARNING: directory 'AnnotationDbi/inst/AnnDbPkg-templates/PIG.DB/inst/extdata' is empty
WARNING: directory 'AnnotationDbi/inst/AnnDbPkg-templates/PIGCHIP.DB/inst/extdata' is empty
WARNING: directory 'AnnotationDbi/inst/AnnDbPkg-templates/RAT.DB/inst/extdata' is empty
WARNING: directory 'AnnotationDbi/inst/AnnDbPkg-templates/RATCHIP.DB/inst/extdata' is empty
WARNING: directory 'AnnotationDbi/inst/AnnDbPkg-templates/WORM.DB/inst/extdata' is empty
WARNING: directory 'AnnotationDbi/inst/AnnDbPkg-templates/WORMCHIP.DB/inst/extdata' is empty
WARNING: directory 'AnnotationDbi/inst/AnnDbPkg-templates/YEAST.DB/inst/extdata' is empty
WARNING: directory 'AnnotationDbi/inst/AnnDbPkg-templates/YEASTCHIP.DB/inst/extdata' is empty
WARNING: directory 'AnnotationDbi/inst/AnnDbPkg-templates/YEASTNCBI.DB/inst/extdata' is empty
WARNING: directory 'AnnotationDbi/inst/AnnDbPkg-templates/ZEBRAFISH.DB/inst/extdata' is empty
WARNING: directory 'AnnotationDbi/inst/AnnDbPkg-templates/ZEBRAFISHCHIP.DB/inst/extdata' is empty
* building 'AnnotationDbi_1.6.1.tar.gz'