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Package 11/319HostnameOS / ArchBUILDCHECKBUILD BIN
AffyExpress 1.10.0
Xuejun Arthur Li
Bioconductor Changelog
Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/AffyExpress
Last Changed Rev: 39013 / Revision: 42512
Last Changed Date: 2009-04-20 16:24:12 -0700 (Mon, 20 Apr 2009)
wilson1 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
Package: AffyExpress
Version: 1.10.0
Command: E:\biocbld\bbs-2.4-bioc\R\bin\R.exe CMD check --no-vignettes AffyExpress_1.10.0.tar.gz
StartedAt: 2009-10-20 16:00:50 -0700 (Tue, 20 Oct 2009)
EndedAt: 2009-10-20 16:02:41 -0700 (Tue, 20 Oct 2009)
EllapsedTime: 111.8 seconds
RetCode: 0
Status: OK
CheckDir: AffyExpress.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.4-bioc/meat/AffyExpress.Rcheck'
* using R version 2.9.2 (2009-08-24)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'AffyExpress/DESCRIPTION' ... OK
* this is package 'AffyExpress' version '1.10.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'AffyExpress' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd files against version 2 parser ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

AffyExpress.Rcheck/00install.out:

* Installing *source* package 'AffyExpress' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

** help
*** installing help indices
 >>> Building/Updating help pages for package 'AffyExpress'
     Formats: text html latex example chm 
  AffyInteraction                   text    html    latex   example chm
  AffyQA                            text    html    latex   example chm
  AffyRegress                       text    html    latex   example chm
  Filter                            text    html    latex   example chm
  import.data                       text    html    latex   example chm
  interaction.result2html           text    html    latex   example chm
  make.contrast                     text    html    latex   example chm
  make.design                       text    html    latex   example chm
  post.interaction                  text    html    latex   example chm
  pre.process                       text    html    latex   example chm
  regress                           text    html    latex   example chm
  result2html                       text    html    latex   example chm
  select.sig.gene                   text    html    latex   example chm
  testData                          text    html    latex           chm
Microsoft HTML Help Compiler 4.74.8702

Compiling e:\biocbld\BBS-2~1.4-B\meat\AFFYEX~1.RCH\00_PKG~1\AFFYEX~1\chm\AffyExpress.chm


Compile time: 0 minutes, 0 seconds
15	Topics
30	Local links
0	Internet links
1	Graphic


Created e:\biocbld\BBS-2~1.4-B\meat\AFFYEX~1.RCH\00_PKG~1\AFFYEX~1\chm\AffyExpress.chm, 33,354 bytes
Compression decreased file by 18,759 bytes.
** building package indices ...
** MD5 sums
* DONE (AffyExpress)