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Package 1/319HostnameOS / ArchBUILDCHECKBUILD BIN
ABarray 1.12.0
Yongming Andrew Sun
Bioconductor Changelog
Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/ABarray
Last Changed Rev: 39013 / Revision: 42512
Last Changed Date: 2009-04-20 16:24:12 -0700 (Mon, 20 Apr 2009)
wilson1 Linux (openSUSE 11.1) / x86_64  OK [ OK ]
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
Package: ABarray
Version: 1.12.0
Command: /home/biocbuild/bbs-2.4-bioc/R/bin/R CMD check --no-vignettes ABarray_1.12.0.tar.gz
StartedAt: 2009-10-20 15:03:05 -0700 (Tue, 20 Oct 2009)
EndedAt: 2009-10-20 15:03:35 -0700 (Tue, 20 Oct 2009)
EllapsedTime: 30.0 seconds
RetCode: 0
Status: OK
CheckDir: ABarray.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.4-bioc/meat/ABarray.Rcheck'
* using R version 2.9.2 (2009-08-24)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'ABarray/DESCRIPTION' ... OK
* this is package 'ABarray' version '1.12.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'ABarray' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
ABarray: no visible binding for global variable 'colSn'
ABarrayGUI : getImputeFunc: no visible binding for global variable
  'knnRbtn'
getPantherMap: no visible binding for global variable 'panther'
* checking Rd files ... OK
* checking Rd files against version 2 parser ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

ABarray.Rcheck/00install.out:

* Installing *source* package 'ABarray' ...
** R
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading Tcl/Tk interface ... done
** help
*** installing help indices
 >>> Building/Updating help pages for package 'ABarray'
     Formats: text html latex example 
  ABarray                           text    html    latex   example
Note: removing empty section \arguments in file 'ABarrayGUI.Rd'
  ABarrayGUI                        text    html    latex   example
Note: removing empty section \examples in file 'calcsn.Rd'
  calcsn                            text    html    latex
  concord                           text    html    latex   example
Note: removing empty section \examples in file 'cvv.Rd'
  cvv                               text    html    latex
Note: removing empty section \examples in file 'cvvPlot.Rd'
  cvvPlot                           text    html    latex
  doANOVA                           text    html    latex   example
  doLPE                             text    html    latex   example
  doPlotEset                        text    html    latex   example
  doPlotFCT                         text    html    latex   example
Note: removing empty section \examples in file 'doVennDiagram.Rd'
  doVennDiagram                     text    html    latex
  drawVennDiagram                   text    html    latex   example
Note: removing empty section \examples in file 'getMemberEset.Rd'
  getMemberEset                     text    html    latex
Note: removing empty section \examples in file 'getPantherMap.Rd'
  getPantherMap                     text    html    latex
Note: removing empty section \examples in file 'hclusterPlot.Rd'
  hclusterPlot                      text    html    latex
  icpPlot                           text    html    latex   example
  imputeFlag                        text    html    latex   example
  lpe.fdr.BH                        text    html    latex   example
  mamaplot                          text    html    latex   example
Note: removing empty section \examples in file 'matrixPlot.Rd'
  matrixPlot                        text    html    latex
  mvaPair2                          text    html    latex   example
  panel.cor                         text    html    latex   example
  panel.scatter                     text    html    latex   example
Note: removing empty section \examples in file 'qnNormalize.Rd'
  qnNormalize                       text    html    latex
  rgcolorsfunc                      text    html    latex   example
Note: removing empty section \examples in file 'savejpg.Rd'
  savejpg                           text    html    latex
  scaleColorBar                     text    html    latex   example
Note: removing empty section \examples in file 'snSummary.Rd'
  snSummary                         text    html    latex
** building package indices ...
* DONE (ABarray)