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estrogen 1.8.2
R. Gentleman
Snapshot Date: 2009-04-10 00:03:00 -0700 (Fri, 10 Apr 2009)
URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/estrogen
Last Changed Rev: 348 / Revision: 760
Last Changed Date: 2007-06-28 17:03:35 -0700 (Thu, 28 Jun 2007)
wilson2 Linux (openSUSE 10.3) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.6) / i386  OK [ OK ] OK 
Package: estrogen
Version: 1.8.2
Command: /Library/Frameworks/R.framework/Versions/2.8/Resources/bin/R CMD check --no-vignettes estrogen_1.8.2.tar.gz
StartedAt: 2009-04-10 01:42:47 -0700 (Fri, 10 Apr 2009)
EndedAt: 2009-04-10 01:43:41 -0700 (Fri, 10 Apr 2009)
EllapsedTime: 54.0 seconds
RetCode: 0
Status: OK
CheckDir: estrogen.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory '/Users/biocbuild/bbs-2.3-data-experiment/meat/estrogen.Rcheck'
* using R version 2.8.1 Patched (2009-03-18 r48200)
* using session charset: ASCII
* checking for file 'estrogen/DESCRIPTION' ... OK
* this is package 'estrogen' version '1.8.2'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'estrogen' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating estrogen-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating estrogen-manual.tex ... OK
* checking estrogen-manual.tex using pdflatex ... OK

estrogen.Rcheck/00install.out:

* Installing *source* package 'estrogen' ...
** R
** inst
** preparing package for lazy loading
Loading required package: affy
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: hgu95av2

******* Deprecation warning *******:

The package 'hgu95av2' is deprecated and will not be supported in the future. 

Instead we strongly reccomend that you should start using the 'hgu95av2.db' package. 

We hope you will enjoy these new packages.  If you still have questions, you can search 
(http://dir.gmane.org/gmane.science.biology.informatics.conductor) or ask the mailing list 
(http://bioconductor.org/docs/mailList.html).  


Loading required package: hgu95av2cdf
Loading required package: vsn
Loading required package: lattice
Loading required package: limma
** help
 >>> Building/Updating help pages for package 'estrogen'
     Formats: text html latex example 
  gentlecol                         text    html    latex
** building package indices ...
* DONE (estrogen)