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Package 15/64HostnameOS / ArchBUILDCHECKBUILD BIN
encoDnaseI 0.0-17
VJ Carey
Snapshot Date: 2009-04-10 00:03:00 -0700 (Fri, 10 Apr 2009)
URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/encoDnaseI
Last Changed Rev: 656 / Revision: 760
Last Changed Date: 2008-05-27 11:03:17 -0700 (Tue, 27 May 2008)
wilson2 Linux (openSUSE 10.3) / x86_64  ERROR  skipped 
liverpool Windows Server 2003 R2 (32-bit) / x64 [ ERROR ] skipped  skipped 
pelham Mac OS X Leopard (10.5.6) / i386  ERROR  skipped  skipped 
Package: encoDnaseI
Version: 0.0-17
Command: E:\biocbld\bbs-2.3-bioc\R\bin\R.exe CMD build encoDnaseI
StartedAt: 2009-04-10 01:45:13 -0700 (Fri, 10 Apr 2009)
EndedAt: 2009-04-10 01:47:06 -0700 (Fri, 10 Apr 2009)
EllapsedTime: 112.8 seconds
RetCode: 1
Status: ERROR
PackageFile: None
PackageFileSize: NA

Command output

* checking for file 'encoDnaseI/DESCRIPTION' ... OK
* preparing 'encoDnaseI':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
installing R.css in E:/biocbld/bbs-2.3-data-experiment/tmpdir/Rinst462487780


---------- Making package encoDnaseI ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  installing R files
  installing inst files
  installing data files
  preparing package encoDnaseI for lazy loading
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: lattice
  installing man source files
  installing indices
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'encoDnaseI'
     Formats: text html latex example chm 
  ALICOR                            text    html    latex   example chm
     missing link(s):  snpScreenResult-class
  encoDnaseI                        text    html    latex   example chm
  hg18track-class                   text    html    latex   example chm
     missing link(s):  eSet-class VersionedBiobase-class Versioned-class
  juxtaPlot                         text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702



Compiling e:\biocbld\bbs-2.3-data-experiment\meat\encoDnaseI\chm\encoDnaseI.chm





Compile time: 0 minutes, 5 seconds

5	Topics

36	Local links

0	Internet links

1	Graphic





Created e:\biocbld\bbs-2.3-data-experiment\meat\encoDnaseI\chm\encoDnaseI.chm, 24,119 bytes

Compression decreased file by 5,803 bytes.

  adding MD5 sums

* DONE (encoDnaseI)
* creating vignettes ... ERROR
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: lattice
Loading required package: GGBase
Loading required package: GSEABase
Loading required package: AnnotationDbi
Loading required package: annotate
Loading required package: xtable
Loading required package: graph
Loading required package: snpMatrix
Loading required package: survival
Loading required package: splines
Loading required package: RSQLite
Loading required package: DBI

Attaching package: 'GGBase'


	The following object(s) are masked from package:encoDnaseI :

	 chrnum 

Loading required package: geneplotter
KernSmooth 2.22 installed
Copyright M. P. Wand 1997

Attaching package: 'geneplotter'


	The following object(s) are masked from package:lattice :

	 panel.smoothScatter 

Loading required package: RColorBrewer
Loading required package: Biostrings
Loading required package: IRanges

Attaching package: 'IRanges'


	The following object(s) are masked from package:Biobase :

	 annotation 


	The following object(s) are masked from package:base :

	 cbind,
	 rbind,
	 sapply 


Attaching package: 'Biostrings'


	The following object(s) are masked from package:graph :

	 complement 


	The following object(s) are masked from package:base :

	 chartr,
	 order,
	 substr,
	 substring 

Loading required package: rtracklayer
Loading required package: RCurl

Attaching package: 'rtracklayer'


	The following object(s) are masked from package:encoDnaseI :

	 dataVals 

Loading required package: rpart
Loading required package: illuminaHumanv1.db

Error: processing vignette 'dnaseUse.Rnw' failed with diagnostics:
 chunk 5 (label=dogg) 
Error in function (classes, fdef, mtable)  : 
  unable to find an inherited method for function "snpLocs.Hs", for signature "character", "missing"
Execution halted