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davidTiling 1.2.8
Wolfgang Huber
Snapshot Date: 2009-04-10 00:03:00 -0700 (Fri, 10 Apr 2009)
URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/davidTiling
Last Changed Rev: 724 / Revision: 760
Last Changed Date: 2008-10-08 08:55:01 -0700 (Wed, 08 Oct 2008)
wilson2 Linux (openSUSE 10.3) / x86_64  OK [ OK ]
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.6) / i386  OK  OK  OK 
Package: davidTiling
Version: 1.2.8
Command: /home/biocbuild/bbs-2.3-bioc/R/bin/R CMD check --no-vignettes davidTiling_1.2.8.tar.gz
StartedAt: 2009-04-10 01:21:22 -0700 (Fri, 10 Apr 2009)
EndedAt: 2009-04-10 01:28:57 -0700 (Fri, 10 Apr 2009)
EllapsedTime: 454.4 seconds
RetCode: 0
Status: OK
CheckDir: davidTiling.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.3-data-experiment/meat/davidTiling.Rcheck'
* using R version 2.8.1 (2008-12-22)
* using session charset: ISO8859-1
* checking for file 'davidTiling/DESCRIPTION' ... OK
* this is package 'davidTiling' version '1.2.8'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'davidTiling' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
GOHyperG: no visible global function definition for
  'replaceSystematicByCommonName'
scoreSegments: no visible binding for global variable 'yeastFeatures'
scoreSegments: no visible binding for global variable 'chrs'
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating davidTiling-Ex.R ... OK
* checking examples ... OK
* creating davidTiling-manual.tex ... OK
* checking davidTiling-manual.tex using pdflatex ... OK

davidTiling.Rcheck/00install.out:

* Installing *source* package 'davidTiling' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: tilingArray
Loading required package: affy
Loading required package: RColorBrewer
Loading required package: grid
Loading required package: strucchange
Loading required package: zoo

Attaching package: 'zoo'


	The following object(s) are masked from package:base :

	 as.Date.numeric 

Loading required package: sandwich
Loading required package: vsn
Loading required package: lattice
Loading required package: limma
Loading required package: genefilter
Loading required package: survival
Loading required package: splines
Loading required package: geneplotter
Loading required package: annotate
Loading required package: AnnotationDbi
Loading required package: xtable
KernSmooth 2.22 installed
Copyright M. P. Wand 1997

Attaching package: 'geneplotter'


	The following object(s) are masked from package:lattice :

	 panel.smoothScatter 

Loading required package: pixmap
Loading required package: GO.db
Loading required package: DBI
** help
 >>> Building/Updating help pages for package 'davidTiling'
     Formats: text html latex example 
Note: removing empty section \examples in file 'GOHyperG.Rd'
  GOHyperG                          text    html    latex
  davidTiling                       text    html    latex   example
  getAttributeField                 text    html    latex   example
Note: removing empty section \examples in file 'getGO.Rd'
  getGO                             text    html    latex
  gff                               text    html    latex   example
  probeAnno                         text    html    latex   example
Note: removing empty section \details in file 'scatterWithHist.Rd'
  scatterWithHist                   text    html    latex   example
Note: removing empty section \examples in file 'scoreSegments.Rd'
  scoreSegments                     text    html    latex
  showDens                          text    html    latex   example
  yeastFeatures                     text    html    latex   example
** building package indices ...
Loading required package: methods
* DONE (davidTiling)