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Package 9/64HostnameOS / ArchBUILDCHECKBUILD BIN
ccTutorial 1.0.2
Joern Toedling
Snapshot Date: 2009-04-10 00:03:00 -0700 (Fri, 10 Apr 2009)
URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/ccTutorial
Last Changed Rev: 749 / Revision: 760
Last Changed Date: 2009-02-10 07:02:07 -0800 (Tue, 10 Feb 2009)
wilson2 Linux (openSUSE 10.3) / x86_64 [ ERROR ] skipped 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.6) / i386  OK  OK  OK 
Package: ccTutorial
Version: 1.0.2
Command: /home/biocbuild/bbs-2.3-bioc/R/bin/R CMD build ccTutorial
StartedAt: 2009-04-10 01:13:49 -0700 (Fri, 10 Apr 2009)
EndedAt: 2009-04-10 01:15:40 -0700 (Fri, 10 Apr 2009)
EllapsedTime: 110.5 seconds
RetCode: 1
Status: ERROR
PackageFile: None
PackageFileSize: NA

Command output

* checking for file 'ccTutorial/DESCRIPTION' ... OK
* preparing 'ccTutorial':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
* Installing *source* package 'ccTutorial' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: Ringo
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: genefilter
Loading required package: survival
Loading required package: splines
Loading required package: geneplotter
Loading required package: lattice
Loading required package: annotate
Loading required package: AnnotationDbi
Loading required package: xtable
KernSmooth 2.22 installed
Copyright M. P. Wand 1997

Attaching package: 'geneplotter'


	The following object(s) are masked from package:lattice :

	 panel.smoothScatter 

Loading required package: limma
Loading required package: vsn
Loading required package: affy
Loading required package: RColorBrewer
Loading required package: SparseM
Package SparseM (0.79) loaded.  To cite, see citation("SparseM")

Attaching package: 'SparseM'


	The following object(s) are masked from package:stats :

	 model.response 


	The following object(s) are masked from package:base :

	 backsolve,
	 chol 

** help
 >>> Building/Updating help pages for package 'ccTutorial'
     Formats: text html latex example 
  X                                 text    html    latex   example
  arrayGenesToProbeSets             text    html    latex   example
  barreraExpressionX                text    html    latex   example
  ccTutorial-package                text    html    latex
  chersX                            text    html    latex   example
  mm9g2p                            text    html    latex   example
  mm9gene2GO                        text    html    latex   example
  mm9genes                          text    html    latex   example
  probeAnno                         text    html    latex   example
** building package indices ...
Loading required package: methods
* DONE (ccTutorial)
* creating vignettes ... ERROR
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_TIME=en_US;LC_COLLATE=en_US;LC_MONETARY=C;LC_MESSAGES=en_US;LC_PAPER=en_US;LC_
NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_US;LC_IDENTIFICATION=C 
[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}]
(./ccTutorialSupplement.aux) )
(see the transcript file for additional information) </var/cache/fonts/pk/ljfou
r/jknappen/ec/tcrm1095.600pk></usr/share/texmf/fonts/type1/bluesky/cm/cmbx12.pf
b></usr/share/texmf/fonts/type1/bluesky/cm/cmr10.pfb></usr/share/texmf/fonts/ty
pe1/bluesky/cm/cmr12.pfb></usr/share/texmf/fonts/type1/bluesky/cm/cmr17.pfb></u
sr/share/texmf/fonts/type1/bluesky/cm/cmtt10.pfb>
Output written on ccTutorialSupplement.pdf (1 page, 39129 bytes).
Transcript written on ccTutorialSupplement.log.
cp -p ../vignettes/ccTutorial.pdf .
cp -p ../vignettes/ccTutorialSupplement.pdf .
R CMD Stangle ../vignettes/ccTutorial.Rnw
make: R: Command not found
make: *** [code] Error 127
Error in buildVignettes(dir = ".") : running 'make' failed
Execution halted