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Package 9/64HostnameOS / ArchBUILDCHECKBUILD BIN
ccTutorial 1.0.2
Joern Toedling
Snapshot Date: 2009-04-10 00:03:00 -0700 (Fri, 10 Apr 2009)
URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/ccTutorial
Last Changed Rev: 749 / Revision: 760
Last Changed Date: 2009-02-10 07:02:07 -0800 (Tue, 10 Feb 2009)
wilson2 Linux (openSUSE 10.3) / x86_64  ERROR  skipped 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
pelham Mac OS X Leopard (10.5.6) / i386  OK  OK  OK 
Package: ccTutorial
Version: 1.0.2
Command: E:\biocbld\bbs-2.3-bioc\R\bin\R.exe CMD check --no-vignettes ccTutorial_1.0.2.tar.gz
StartedAt: 2009-04-10 02:02:38 -0700 (Fri, 10 Apr 2009)
EndedAt: 2009-04-10 02:11:25 -0700 (Fri, 10 Apr 2009)
EllapsedTime: 527.2 seconds
RetCode: 0
Status: OK
CheckDir: ccTutorial.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.3-data-experiment/meat/ccTutorial.Rcheck'
* using R version 2.8.1 (2008-12-22)
* using session charset: ISO8859-1
* checking for file 'ccTutorial/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'ccTutorial' version '1.0.2'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'ccTutorial' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating ccTutorial-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating ccTutorial-manual.tex ... OK
* checking ccTutorial-manual.tex using pdflatex ... OK

ccTutorial.Rcheck/00install.out:

installing R.css in E:/biocbld/bbs-2.3-data-experiment/meat/ccTutorial.Rcheck


---------- Making package ccTutorial ------------
  adding build stamp to DESCRIPTION
  installing R files
  installing inst files
  installing data files
  preparing package ccTutorial for lazy loading
Loading required package: Ringo
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: genefilter
Loading required package: survival
Loading required package: splines
Loading required package: geneplotter
Loading required package: lattice
Loading required package: annotate
Loading required package: AnnotationDbi
Loading required package: xtable
KernSmooth 2.22 installed
Copyright M. P. Wand 1997

Attaching package: 'geneplotter'


	The following object(s) are masked from package:lattice :

	 panel.smoothScatter 

Loading required package: limma
Loading required package: vsn
Loading required package: affy
Loading required package: RColorBrewer
Loading required package: SparseM

Attaching package: 'SparseM'


	The following object(s) are masked from package:stats :

	 model.response 


	The following object(s) are masked from package:base :

	 backsolve,
	 chol 

  installing man source files
  installing indices
Loading required package: methods
Loading required package: Biobase
Loading required package: tools
Loading required package: utils

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

  not zipping data
  installing help
 >>> Building/Updating help pages for package 'ccTutorial'
     Formats: text html latex example chm 
  X                                 text    html    latex   example chm
  arrayGenesToProbeSets             text    html    latex   example chm
  barreraExpressionX                text    html    latex   example chm
  ccTutorial-package                text    html    latex           chm
  chersX                            text    html    latex   example chm
  mm9g2p                            text    html    latex   example chm
  mm9gene2GO                        text    html    latex   example chm
  mm9genes                          text    html    latex   example chm
  probeAnno                         text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling e:\biocbld\bbs-2.3-data-experiment\meat\ccTutorial.Rcheck\00_pkg_src\ccTutorial\chm\ccTutorial.chm


Compile time: 0 minutes, 0 seconds
10	Topics
19	Local links
0	Internet links
1	Graphic


Created e:\biocbld\bbs-2.3-data-experiment\meat\ccTutorial.Rcheck\00_pkg_src\ccTutorial\chm\ccTutorial.chm, 22,567 bytes
Compression decreased file by 2,488 bytes.
  adding MD5 sums

* DONE (ccTutorial)