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Package 293/294HostnameOS / ArchBUILDCHECKBUILD BIN
xps 1.2.10
Christian Stratowa
Bioconductor Changelog
Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/xps
Last Changed Rev: 38744 / Revision: 38965
Last Changed Date: 2009-04-12 10:22:40 -0700 (Sun, 12 Apr 2009)
wilson2 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  WARNINGS  ERROR 
pelham Mac OS X Leopard (10.5.6) / i386  OK  WARNINGS  OK 
Package: xps
Version: 1.2.10
Command: E:\biocbld\bbs-2.3-bioc\R\bin\R.exe CMD check --no-vignettes xps_1.2.10.tar.gz
StartedAt: 2009-04-18 20:16:00 -0700 (Sat, 18 Apr 2009)
EndedAt: 2009-04-18 20:19:17 -0700 (Sat, 18 Apr 2009)
EllapsedTime: 197.0 seconds
RetCode: 0
Status: OK
CheckDir: xps.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.3-bioc/meat/xps.Rcheck'
* using R version 2.8.1 (2008-12-22)
* using session charset: ISO8859-1
* checking for file 'xps/DESCRIPTION' ... OK
* this is package 'xps' version '1.2.10'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'xps' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating xps-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating xps-manual.tex ... OK
* checking xps-manual.tex using pdflatex ... OK

xps.Rcheck/00install.out:

installing R.css in E:/biocbld/bbs-2.3-bioc/meat/xps.Rcheck


---------- Making package xps ------------
testing for presence of ROOT...
   found root.exe of ROOT in directory C:/root/bin...OK
testing for presence of MSVC++...
   found Visual C++ compiler in directory C:\Program Files\Microsoft Visual Studio 9.0\VC/bin...OK
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  running src/Makefile.win ...
"C:\Program Files\Microsoft Visual Studio 9.0\VC\bin/cl" /I"C:/root/include" /FIw32pragma.h /MT /EHsc /Ox /D "MSVC" /D "WIN32" /c TMLMath.cxx
Microsoft (R) 32-bit C/C++ Optimizing Compiler Version 15.00.21022.08 for 80x86
Copyright (C) Microsoft Corporation.  All rights reserved.

TMLMath.cxx
TMLMath.cxx(1109) : warning C4005: 'xmax' : macro redefinition
        TMLMath.cxx(1060) : see previous definition of 'xmax'
"C:\Program Files\Microsoft Visual Studio 9.0\VC\bin/cl" /I"C:/root/include" /FIw32pragma.h /MT /EHsc /Ox /D "MSVC" /D "WIN32" /c TStat.cxx
Microsoft (R) 32-bit C/C++ Optimizing Compiler Version 15.00.21022.08 for 80x86
Copyright (C) Microsoft Corporation.  All rights reserved.

TStat.cxx
"C:\Program Files\Microsoft Visual Studio 9.0\VC\bin/cl" /I"C:/root/include" /FIw32pragma.h /MT /EHsc /Ox /D "MSVC" /D "WIN32" /c StatUtils.cxx
Microsoft (R) 32-bit C/C++ Optimizing Compiler Version 15.00.21022.08 for 80x86
Copyright (C) Microsoft Corporation.  All rights reserved.

StatUtils.cxx
"C:\Program Files\Microsoft Visual Studio 9.0\VC\bin/cl" /I"C:/root/include" /FIw32pragma.h /MT /EHsc /Ox /D "MSVC" /D "WIN32" /c XPSBase.cxx
Microsoft (R) 32-bit C/C++ Optimizing Compiler Version 15.00.21022.08 for 80x86
Copyright (C) Microsoft Corporation.  All rights reserved.

XPSBase.cxx
"C:\Program Files\Microsoft Visual Studio 9.0\VC\bin/cl" /I"C:/root/include" /FIw32pragma.h /MT /EHsc /Ox /D "MSVC" /D "WIN32" /c XPSUtils.cxx
Microsoft (R) 32-bit C/C++ Optimizing Compiler Version 15.00.21022.08 for 80x86
Copyright (C) Microsoft Corporation.  All rights reserved.

XPSUtils.cxx
"C:\Program Files\Microsoft Visual Studio 9.0\VC\bin/cl" /I"C:/root/include" /FIw32pragma.h /MT /EHsc /Ox /D "MSVC" /D "WIN32" /c XPSSchemes.cxx
Microsoft (R) 32-bit C/C++ Optimizing Compiler Version 15.00.21022.08 for 80x86
Copyright (C) Microsoft Corporation.  All rights reserved.

XPSSchemes.cxx
"C:\Program Files\Microsoft Visual Studio 9.0\VC\bin/cl" /I"C:/root/include" /FIw32pragma.h /MT /EHsc /Ox /D "MSVC" /D "WIN32" /c XPSDataTypes.cxx
Microsoft (R) 32-bit C/C++ Optimizing Compiler Version 15.00.21022.08 for 80x86
Copyright (C) Microsoft Corporation.  All rights reserved.

XPSDataTypes.cxx
"C:\Program Files\Microsoft Visual Studio 9.0\VC\bin/cl" /I"C:/root/include" /FIw32pragma.h /MT /EHsc /Ox /D "MSVC" /D "WIN32" /c XPSProjectHandler.cxx
Microsoft (R) 32-bit C/C++ Optimizing Compiler Version 15.00.21022.08 for 80x86
Copyright (C) Microsoft Corporation.  All rights reserved.

XPSProjectHandler.cxx
"C:\Program Files\Microsoft Visual Studio 9.0\VC\bin/cl" /I"C:/root/include" /FIw32pragma.h /MT /EHsc /Ox /D "MSVC" /D "WIN32" /c XPSData.cxx
Microsoft (R) 32-bit C/C++ Optimizing Compiler Version 15.00.21022.08 for 80x86
Copyright (C) Microsoft Corporation.  All rights reserved.

XPSData.cxx
"C:\Program Files\Microsoft Visual Studio 9.0\VC\bin/cl" /I"C:/root/include" /FIw32pragma.h /MT /EHsc /Ox /D "MSVC" /D "WIN32" /c XPSProcessing.cxx
Microsoft (R) 32-bit C/C++ Optimizing Compiler Version 15.00.21022.08 for 80x86
Copyright (C) Microsoft Corporation.  All rights reserved.

XPSProcessing.cxx
"C:\Program Files\Microsoft Visual Studio 9.0\VC\bin/cl" /I"C:/root/include" /FIw32pragma.h /MT /EHsc /Ox /D "MSVC" /D "WIN32" /c XPSHybridizer.cxx
Microsoft (R) 32-bit C/C++ Optimizing Compiler Version 15.00.21022.08 for 80x86
Copyright (C) Microsoft Corporation.  All rights reserved.

XPSHybridizer.cxx
"C:\Program Files\Microsoft Visual Studio 9.0\VC\bin/cl" /I"C:/root/include" /FIw32pragma.h /MT /EHsc /Ox /D "MSVC" /D "WIN32" /c XPSSelector.cxx
Microsoft (R) 32-bit C/C++ Optimizing Compiler Version 15.00.21022.08 for 80x86
Copyright (C) Microsoft Corporation.  All rights reserved.

XPSSelector.cxx
"C:\Program Files\Microsoft Visual Studio 9.0\VC\bin/cl" /I"C:/root/include" /FIw32pragma.h /MT /EHsc /Ox /D "MSVC" /D "WIN32" /c XPSNormalizer.cxx
Microsoft (R) 32-bit C/C++ Optimizing Compiler Version 15.00.21022.08 for 80x86
Copyright (C) Microsoft Corporation.  All rights reserved.

XPSNormalizer.cxx
"C:\Program Files\Microsoft Visual Studio 9.0\VC\bin/cl" /I"C:/root/include" /FIw32pragma.h /MT /EHsc /Ox /D "MSVC" /D "WIN32" /c XPSPreProcessing.cxx
Microsoft (R) 32-bit C/C++ Optimizing Compiler Version 15.00.21022.08 for 80x86
Copyright (C) Microsoft Corporation.  All rights reserved.

XPSPreProcessing.cxx
"C:\Program Files\Microsoft Visual Studio 9.0\VC\bin/cl" /I"C:/root/include" /FIw32pragma.h /MT /EHsc /Ox /D "MSVC" /D "WIN32" /c XPSNormation.cxx
Microsoft (R) 32-bit C/C++ Optimizing Compiler Version 15.00.21022.08 for 80x86
Copyright (C) Microsoft Corporation.  All rights reserved.

XPSNormation.cxx
"C:\Program Files\Microsoft Visual Studio 9.0\VC\bin/cl" /I"C:/root/include" /FIw32pragma.h /MT /EHsc /Ox /D "MSVC" /D "WIN32" /c XPSFilter.cxx
Microsoft (R) 32-bit C/C++ Optimizing Compiler Version 15.00.21022.08 for 80x86
Copyright (C) Microsoft Corporation.  All rights reserved.

XPSFilter.cxx
"C:\Program Files\Microsoft Visual Studio 9.0\VC\bin/cl" /I"C:/root/include" /FIw32pragma.h /MT /EHsc /Ox /D "MSVC" /D "WIN32" /c XPSAnalyzer.cxx
Microsoft (R) 32-bit C/C++ Optimizing Compiler Version 15.00.21022.08 for 80x86
Copyright (C) Microsoft Corporation.  All rights reserved.

XPSAnalyzer.cxx
"C:\Program Files\Microsoft Visual Studio 9.0\VC\bin/cl" /I"C:/root/include" /FIw32pragma.h /MT /EHsc /Ox /D "MSVC" /D "WIN32" /c XPSAnalysis.cxx
Microsoft (R) 32-bit C/C++ Optimizing Compiler Version 15.00.21022.08 for 80x86
Copyright (C) Microsoft Corporation.  All rights reserved.

XPSAnalysis.cxx
"C:\Program Files\Microsoft Visual Studio 9.0\VC\bin/cl" /I"C:/root/include" /FIw32pragma.h /MT /EHsc /Ox /D "MSVC" /D "WIN32" /c rwrapper.cxx
Microsoft (R) 32-bit C/C++ Optimizing Compiler Version 15.00.21022.08 for 80x86
Copyright (C) Microsoft Corporation.  All rights reserved.

rwrapper.cxx
"C:\Program Files\Microsoft Visual Studio 9.0\VC\bin/cl" /I"C:/root/include" /FIw32pragma.h /MT /EHsc /Ox /D "MSVC" /D "WIN32" /c xpsDict.cxx
Microsoft (R) 32-bit C/C++ Optimizing Compiler Version 15.00.21022.08 for 80x86
Copyright (C) Microsoft Corporation.  All rights reserved.

xpsDict.cxx
"C:\Program Files\Microsoft Visual Studio 9.0\VC\bin/link" /dll /def:xps.def /out:xps.dll fp10.obj  -opt:noref  -nologo -include:_G__cpp_setupG__Hist -include:_G__cpp_setupG__Graf -include:_G__cpp_setupG__G3D -include:_G__cpp_setupG__GPad -include:_G__cpp_setupG__Tree -include:_G__cpp_setupG__Rint -include:_G__cpp_setupG__PostScript -include:_G__cpp_setupG__Matrix -include:_G__cpp_setupG__Physics -include:_G__cpp_setupG__Ged  "C:/root/lib/libCore.lib" "C:/root/lib/libCint.lib" "C:/root/lib/libHist.lib" "C:/root/lib/libGraf.lib" "C:/root/lib/libGraf3d.lib" "C:/root/lib/libGpad.lib" "C:/root/lib/libTree.lib" "C:/root/lib/libRint.lib" "C:/root/lib/libPostscript.lib" "C:/root/lib/libMatrix.lib" "C:/root/lib/libPhysics.lib" "C:/root/lib/libNet.lib" "C:/root/lib/libRIO.lib" "C:/root/lib/libMathCore.lib" "C:/root/lib/libGui.lib" "C:/root/lib/libGraf.lib" "C:/root/lib/libGpad.lib" "C:/root/lib/libGed.lib" "C:/root/lib/libTreePlayer.lib" "C:/root/lib/libTreeViewer.lib" *.obj 
   Creating library xps.lib and object xps.exp
  ... done
  installing DLL
  installing R files
  installing inst files
  preparing package xps for lazy loading
  installing man source files
  installing indices
  installing help
 >>> Building/Updating help pages for package 'xps'
     Formats: text html latex example chm 
  AnalysisTreeSet-class             text    html    latex   example chm
  CallTreeSet-class                 text    html    latex   example chm
  DataTreeSet-class                 text    html    latex   example chm
  ExprTreeSet-class                 text    html    latex   example chm
  Filter-class                      text    html    latex   example chm
  FilterTreeSet-class               text    html    latex   example chm
  PreFilter-class                   text    html    latex   example chm
  PreFilter-constructor             text    html    latex   example chm
  ProcesSet-class                   text    html    latex   example chm
  ProjectInfo-class                 text    html    latex   example chm
  ProjectInfo-constructor           text    html    latex   example chm
  ROOT                              text    html    latex           chm
  SchemeTreeSet-class               text    html    latex   example chm
  TreeSet-class                     text    html    latex   example chm
  UniFilter-class                   text    html    latex   example chm
  UniFilter-constructor             text    html    latex   example chm
  addData-methods                   text    html    latex   example chm
  attachBgrd-methods                text    html    latex           chm
  attachCall-methods                text    html    latex   example chm
  attachExpr-methods                text    html    latex   example chm
  attachInten-methods               text    html    latex   example chm
  attachMask-methods                text    html    latex   example chm
  bgcorrect                         text    html    latex   example chm
  boxplot-methods                   text    html    latex   example chm
  boxplot.dev                       text    html    latex           chm
  callFilter-methods                text    html    latex   example chm
  callplot-methods                  text    html    latex           chm
  cvFilter-methods                  text    html    latex   example chm
  dabg.call                         text    html    latex   example chm
  dfw                               text    html    latex   example chm
  diffFilter-methods                text    html    latex   example chm
  existsROOTFile                    text    html    latex   example chm
  exonLevel                         text    html    latex   example chm
  export                            text    html    latex   example chm
  export.filter                     text    html    latex           chm
  export.root                       text    html    latex   example chm
  express                           text    html    latex   example chm
  exprs-methods                     text    html    latex   example chm
  farms                             text    html    latex   example chm
  fcFilter-methods                  text    html    latex   example chm
  gapFilter-methods                 text    html    latex   example chm
  getChipName                       text    html    latex   example chm
  getChipType                       text    html    latex   example chm
  getDatatype                       text    html    latex   example chm
  getNameType                       text    html    latex   example chm
  getNumberTrees                    text    html    latex   example chm
  getProbeInfo                      text    html    latex   example chm
  getTreeData-methods               text    html    latex           chm
  getTreeNames                      text    html    latex   example chm
  highFilter-methods                text    html    latex   example chm
  hist-methods                      text    html    latex   example chm
  image-methods                     text    html    latex           chm
  image.dev                         text    html    latex   example chm
  import.data                       text    html    latex   example chm
  import.exon.scheme                text    html    latex   example chm
  import.expr.scheme                text    html    latex   example chm
  import.genome.scheme              text    html    latex   example chm
  ini.call                          text    html    latex   example chm
  initialize-methods                text    html    latex           chm
  isROOTFile                        text    html    latex   example chm
  lowFilter-methods                 text    html    latex   example chm
  madFilter-methods                 text    html    latex   example chm
  mas4                              text    html    latex   example chm
  mas5                              text    html    latex   example chm
  mas5.call                         text    html    latex   example chm
  mboxplot-methods                  text    html    latex   example chm
  metaProbesets                     text    html    latex   example chm
  mvaplot-methods                   text    html    latex           chm
  mvaplot.dev                       text    html    latex           chm
  normalize                         text    html    latex   example chm
  pm-methods                        text    html    latex   example chm
  pmplot-methods                    text    html    latex   example chm
  prefilter                         text    html    latex   example chm
  presCall-methods                  text    html    latex   example chm
  quantileFilter-methods            text    html    latex   example chm
  ratioFilter-methods               text    html    latex   example chm
  rawCELName-methods                text    html    latex   example chm
  rma                               text    html    latex   example chm
  root.browser-methods              text    html    latex           chm
  root.call                         text    html    latex   example chm
  root.data                         text    html    latex   example chm
  root.density                      text    html    latex   example chm
  root.expr                         text    html    latex   example chm
  root.graph1D                      text    html    latex   example chm
  root.graph2D                      text    html    latex   example chm
  root.hist1D                       text    html    latex   example chm
  root.hist2D                       text    html    latex   example chm
  root.hist3D                       text    html    latex   example chm
  root.image                        text    html    latex   example chm
  root.mvaplot                      text    html    latex   example chm
  root.profile                      text    html    latex   example chm
  root.scheme                       text    html    latex   example chm
  summarize                         text    html    latex   example chm
  type2Exten                        text    html    latex   example chm
  uniTest-methods                   text    html    latex   example chm
  unifilter                         text    html    latex   example chm
  unitestFilter-methods             text    html    latex   example chm
  validData-methods                 text    html    latex           chm
  validTreetype                     text    html    latex   example chm
  varFilter-methods                 text    html    latex   example chm
  volcanoplot-methods               text    html    latex           chm
  xps-package                       text    html    latex           chm
  xpsOptions                        text    html    latex           chm
Microsoft HTML Help Compiler 4.74.8702

Compiling e:\biocbld\bbs-2.3-bioc\meat\xps.Rcheck\00_pkg_src\xps\chm\xps.chm


Compile time: 0 minutes, 1 second
104	Topics
1,132	Local links
9	Internet links
1	Graphic


Created e:\biocbld\bbs-2.3-bioc\meat\xps.Rcheck\00_pkg_src\xps\chm\xps.chm, 161,880 bytes
Compression decreased file by 438,199 bytes.
  adding MD5 sums

* DONE (xps)