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Package 262/294HostnameOS / ArchBUILDCHECKBUILD BIN
simulatorAPMS 1.14.0
Tony Chiang
Bioconductor Changelog
Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/simulatorAPMS
Last Changed Rev: 34811 / Revision: 38965
Last Changed Date: 2008-10-21 15:32:58 -0700 (Tue, 21 Oct 2008)
wilson2 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK [ OK ]
pelham Mac OS X Leopard (10.5.6) / i386  OK  OK  OK 
Package: simulatorAPMS
Version: 1.14.0
Command: /Users/biocbuild/BBS/utils/build-universal.sh simulatorAPMS_1.14.0.tar.gz /Library/Frameworks/R.framework/Versions/2.8/Resources/bin/R simulatorAPMS.buildbin-libdir
StartedAt: 2009-04-18 18:38:09 -0700 (Sat, 18 Apr 2009)
EndedAt: 2009-04-18 18:38:23 -0700 (Sat, 18 Apr 2009)
EllapsedTime: 13.8 seconds
RetCode: 0
Status: OK
PackageFile: simulatorAPMS_1.14.0.tgz
PackageFileSize: 205.7 KiB

Command output

                INSTALLATION WITH 'R CMD INSTALL --library=simulatorAPMS.buildbin-libdir simulatorAPMS_1.14.0.tar.gz'

* Installing *source* package 'simulatorAPMS' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: graph
Loading required package: apComplex
Loading required package: RBGL
Loading required package: Rgraphviz
Loading required package: grid
Loading required package: org.Sc.sgd.db
Loading required package: AnnotationDbi
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: DBI
Loading required package: ScISI
Loading required package: GO.db
Loading required package: GOstats
Loading required package: annotate
Loading required package: xtable

Attaching package: 'annotate'


	The following object(s) are masked from package:Rgraphviz :

	 toFile 

Loading required package: Category
Loading required package: genefilter
Loading required package: survival
Loading required package: splines
Loading required package: RpsiXML
Loading required package: XML

Attaching package: 'XML'


	The following object(s) are masked from package:graph :

	 addNode 

Loading required package: hypergraph

Attaching package: 'hypergraph'


	The following object(s) are masked from package:xtable :

	 label,
	 label<- 


	The following object(s) are masked from package:AnnotationDbi :

	 head,
	 tail 


	The following object(s) are masked from package:Rgraphviz :

	 head,
	 tail 


	The following object(s) are masked from package:utils :

	 head,
	 tail 

Loading required package: ppiStats
Loading required package: ppiData
Loading required package: lattice
Loading required package: RColorBrewer
** help
 >>> Building/Updating help pages for package 'simulatorAPMS'
     Formats: text html latex example 
Note: removing empty section \source in file 'APComEX.Rd'
Note: removing empty section \references in file 'APComEX.Rd'
  APComEX                           text    html    latex   example
Note: removing empty section \source in file 'PPIEX.Rd'
Note: removing empty section \references in file 'PPIEX.Rd'
  PPIEX                             text    html    latex   example
Note: removing empty section \details in file 'TSNMatrix.Rd'
  TSNMatrix                         text    html    latex   example
  applyDeformationError             text    html    latex   example
  applyFNErrors                     text    html    latex   example
  applyFPErrors                     text    html    latex   example
  applyStickyError                  text    html    latex   example
Note: removing empty section \details in file 'compIndep.Rd'
  compIndep                         text    html    latex   example
Note: unmatched right brace in file 'filteredProt.Rd' on or after line 14
  filteredProt                      text    html    latex   example
Note: removing empty section \source in file 'fullSimEX.Rd'
Note: removing empty section \references in file 'fullSimEX.Rd'
  fullSimEX                         text    html    latex   example
Note: removing empty section \source in file 'missedProtEX.Rd'
Note: removing empty section \references in file 'missedProtEX.Rd'
  missedProtEX                      text    html    latex   example
Note: removing empty section \source in file 'missedProtHMSPCI.Rd'
Note: removing empty section \details in file 'missedProtHMSPCI.Rd'
Note: removing empty section \references in file 'missedProtHMSPCI.Rd'
  missedProtHMSPCI                  text    html    latex   example
  recordSticky                      text    html    latex   example
  runAPComplex                      text    html    latex   example
  runCompIndep                      text    html    latex   example
Note: removing empty section \source in file 'runSimEX.Rd'
Note: removing empty section \references in file 'runSimEX.Rd'
  runSimEX                          text    html    latex   example
  runSimulators                     text    html    latex   example
Note: removing empty section \source in file 'simEX.Rd'
Note: removing empty section \references in file 'simEX.Rd'
  simEX                             text    html    latex   example
  simulator                         text    html    latex   example
  simulatorD                        text    html    latex   example
  simulatorS                        text    html    latex   example
Note: removing empty section \source in file 'vBaits.Rd'
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  vBaits                            text    html    latex   example
Note: removing empty section \source in file 'vBaitsEX.Rd'
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  vBaitsEX                          text    html    latex   example
Note: removing empty section \source in file 'vDeformEX.Rd'
Note: removing empty section \details in file 'vDeformEX.Rd'
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  vDeformEX                         text    html    latex   example
  vDeformed                         text    html    latex   example
Note: removing empty section \source in file 'vDeformedEX.Rd'
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  vDeformedEX                       text    html    latex   example
Note: removing empty section \source in file 'vStickyEX.Rd'
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  vStickyEX                         text    html    latex   example
** building package indices ...
* DONE (simulatorAPMS)