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Package 247/294HostnameOS / ArchBUILDCHECKBUILD BIN
rtracklayer 1.2.2
Michael Lawrence
Bioconductor Changelog
Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/rtracklayer
Last Changed Rev: 35218 / Revision: 38965
Last Changed Date: 2008-11-10 08:36:42 -0800 (Mon, 10 Nov 2008)
wilson2 Linux (openSUSE 11.1) / x86_64  OK [ OK ]
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.6) / i386  OK  OK  OK 
Package: rtracklayer
Version: 1.2.2
Command: /home/biocbuild/bbs-2.3-bioc/R/bin/R CMD check --no-vignettes rtracklayer_1.2.2.tar.gz
StartedAt: 2009-04-18 16:35:11 -0700 (Sat, 18 Apr 2009)
EndedAt: 2009-04-18 16:37:10 -0700 (Sat, 18 Apr 2009)
EllapsedTime: 118.6 seconds
RetCode: 0
Status: OK
CheckDir: rtracklayer.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.3-bioc/meat/rtracklayer.Rcheck'
* using R version 2.8.1 (2008-12-22)
* using session charset: UTF-8
* checking for file 'rtracklayer/DESCRIPTION' ... OK
* this is package 'rtracklayer' version '1.2.2'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'rtracklayer' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
activeView,argoView: no visible binding for global variable ‘active’
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating rtracklayer-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating rtracklayer-manual.tex ... OK
* checking rtracklayer-manual.tex using pdflatex ... OK

rtracklayer.Rcheck/00install.out:

* Installing *source* package 'rtracklayer' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: RCurl
** help
 >>> Building/Updating help pages for package 'rtracklayer'
     Formats: text html latex example 
  activeView-methods                text    html    latex   example
  argoSession-class                 text    html    latex
  argoView-class                    text    html    latex
  basicTrackLine-class              text    html    latex
  browseGenome                      text    html    latex   example
  browserSession-class              text    html    latex
  browserSession-methods            text    html    latex
  browserView-class                 text    html    latex
  browserView-methods               text    html    latex   example
  browserViews-methods              text    html    latex   example
  chrid-class                       text    html    latex
  chrid-methods                     text    html    latex   example
  cpneTrack                         text    html    latex   example
  dataVals-methods                  text    html    latex   example
  export                            text    html    latex   example
  export.gff                        text    html    latex   example
  genomeBrowsers                    text    html    latex
  genomeSegment-class               text    html    latex
  genomeSegment-methods             text    html    latex   example
  genomeSequence-methods            text    html    latex
  import                            text    html    latex   example
  import.gff                        text    html    latex   example
  laySequence-methods               text    html    latex
  layTrack-methods                  text    html    latex   example
  trackData                         text    html    latex
  trackSet-class                    text    html    latex
  trackSet-methods                  text    html    latex   example
  trackSets-class                   text    html    latex
  trackSets-methods                 text    html    latex
  tracks-methods                    text    html    latex
  ucscSession-class                 text    html    latex
  ucscTable                         text    html    latex
  ucscTrackLine-class               text    html    latex
  ucscTrackModes-class              text    html    latex
  ucscTrackModes-methods            text    html    latex   example
  ucscTrackSet-class                text    html    latex
  ucscView-class                    text    html    latex
  wigTrackLine-class                text    html    latex
** building package indices ...
* DONE (rtracklayer)