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Package 216/294HostnameOS / ArchBUILDCHECKBUILD BIN
prada 1.18.0
Florian Hahne
Bioconductor Changelog
Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/prada
Last Changed Rev: 34811 / Revision: 38965
Last Changed Date: 2008-10-21 15:32:58 -0700 (Tue, 21 Oct 2008)
wilson2 Linux (openSUSE 11.1) / x86_64  OK [ OK ]
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.6) / i386  OK  OK  OK 
Package: prada
Version: 1.18.0
Command: /home/biocbuild/bbs-2.3-bioc/R/bin/R CMD check --no-vignettes prada_1.18.0.tar.gz
StartedAt: 2009-04-18 16:21:45 -0700 (Sat, 18 Apr 2009)
EndedAt: 2009-04-18 16:22:40 -0700 (Sat, 18 Apr 2009)
EllapsedTime: 55.5 seconds
RetCode: 0
Status: OK
CheckDir: prada.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.3-bioc/meat/prada.Rcheck'
* using R version 2.8.1 (2008-12-22)
* using session charset: UTF-8
* checking for file 'prada/DESCRIPTION' ... OK
* this is package 'prada' version '1.18.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'prada' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
gatePoints: no visible binding for global variable ‘prev’
killProgress: no visible binding for global variable
  ‘.tkprogress.canceled’
killProgress: no visible binding for global variable
  ‘.tkprogress.window’
progress: no visible binding for global variable ‘.tkprogress.window’
progress: no visible binding for '<<-' assignment to
  ‘.tkprogress.labelText’
progress: no visible binding for global variable
  ‘.tkprogress.labelText’
progress: no visible binding for global variable ‘.tkprogress.iterator’
progress: no visible binding for global variable
  ‘.tkprogress.fallbackIterator’
progress : <anonymous>: no visible binding for '<<-' assignment to
  ‘.tkprogress.canceled’
updateProgress: no visible binding for '<<-' assignment to
  ‘.tkprogress.iterator’
updateProgress: no visible binding for global variable
  ‘.tkprogress.iterator’
updateProgress: no visible binding for '<<-' assignment to
  ‘.tkprogress.fallbackIterator’
updateProgress: no visible binding for global variable
  ‘.tkprogress.fallbackIterator’
updateProgress: no visible binding for '<<-' assignment to
  ‘.tkprogress.labelText’
updateProgress: no visible binding for global variable
  ‘.tkprogress.labelText’
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating prada-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating prada-manual.tex ... OK
* checking prada-manual.tex using pdflatex ... OK

prada.Rcheck/00install.out:

* Installing *source* package 'prada' ...
** libs
gcc -std=gnu99 -I/home/biocbuild/bbs-2.3-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c inPolygon.c -o inPolygon.o
gcc -std=gnu99 -shared -L/usr/local/lib64 -o prada.so inPolygon.o   -L/home/biocbuild/bbs-2.3-bioc/R/lib -lR
** R
** data
** inst
** preparing package for lazy loading
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: RColorBrewer
Loading required package: grid
Loading required package: rrcov
Loading required package: robustbase
Loading required package: pcaPP
Loading required package: mvtnorm
pcaPP 0.1-1 loaded
Scalable Robust Estimators with High Breakdown Point (version 0.5-01)
KernSmooth 2.22 installed
Copyright M. P. Wand 1997
Creating a new generic function for "colnames" in "prada"
Creating a new generic function for "nrow" in "prada"
Creating a new generic function for "ncol" in "prada"
Creating a new generic function for "split" in "prada"
** help
 >>> Building/Updating help pages for package 'prada'
     Formats: text html latex example 
  analysePlate                      text    html    latex   example
  as.all                            text    html    latex   example
  barploterrbar                     text    html    latex   example
Note: ignoring empty \keyword entries in file 'combineFrames.Rd'
Note: removing empty section \details in file 'combineFrames.Rd'
Note: removing empty section \seealso in file 'combineFrames.Rd'
  combineFrames                     text    html    latex   example
  csApply                           text    html    latex   example
  cytoFrame-class                   text    html    latex   example
  cytoSet-class                     text    html    latex   example
  data-cytoFrame                    text    html    latex   example
  data-cytoSet                      text    html    latex   example
Note: ignoring empty \keyword entries in file 'devDims.Rd'
  devDims                           text    html    latex   example
Note: ignoring empty \keyword entries in file 'devRes.Rd'
  devRes                            text    html    latex   example
Note: ignoring empty \keyword entries in file 'fitNorm2.Rd'
  fitNorm2                          text    html    latex   example
  gate-class                        text    html    latex   example
  gateSet-class                     text    html    latex   example
  getPradaPar                       text    html    latex   example
  new-internal                      text    html    latex
Note: ignoring empty \keyword entries in file 'plotNorm2.Rd'
  plotNorm2                         text    html    latex   example
  plotPlate                         text    html    latex   example
  readCytoSet                       text    html    latex   example
  readFCS                           text    html    latex   example
Note: removing empty section \examples in file 'readFCSaux.Rd'
  readFCSaux                        text    html    latex
Note: ignoring empty \keyword entries in file 'removeCensored.Rd'
Note: removing empty section \seealso in file 'removeCensored.Rd'
  removeCensored                    text    html    latex   example
Note: removing empty section \seealso in file 'tcltkProgress.Rd'
  tcltkProgress                     text    html    latex   example
  threePanelPlot                    text    html    latex   example
Note: ignoring empty \keyword entries in file 'thresholds.Rd'
Note: removing empty section \seealso in file 'thresholds.Rd'
  thresholds                        text    html    latex   example
  touchFCS                          text    html    latex
Note: ignoring empty \keyword entries in file 'vpLocation.Rd'
  vpLocation                        text    html    latex   example
** building package indices ...
KernSmooth 2.22 installed
Copyright M. P. Wand 1997
Loading required package: methods
* DONE (prada)