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Package 216/294HostnameOS / ArchBUILDCHECKBUILD BIN
prada 1.18.0
Florian Hahne
Bioconductor Changelog
Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/prada
Last Changed Rev: 34811 / Revision: 38965
Last Changed Date: 2008-10-21 15:32:58 -0700 (Tue, 21 Oct 2008)
wilson2 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.6) / i386  OK  OK  OK 
Package: prada
Version: 1.18.0
Command: E:\biocbld\bbs-2.3-bioc\R\bin\R.exe CMD check --no-vignettes prada_1.18.0.tar.gz
StartedAt: 2009-04-18 19:41:57 -0700 (Sat, 18 Apr 2009)
EndedAt: 2009-04-18 19:43:22 -0700 (Sat, 18 Apr 2009)
EllapsedTime: 84.2 seconds
RetCode: 0
Status: OK
CheckDir: prada.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.3-bioc/meat/prada.Rcheck'
* using R version 2.8.1 (2008-12-22)
* using session charset: ISO8859-1
* checking for file 'prada/DESCRIPTION' ... OK
* this is package 'prada' version '1.18.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'prada' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
gatePoints: no visible binding for global variable 'prev'
killProgress: no visible binding for global variable
  '.tkprogress.canceled'
killProgress: no visible binding for global variable
  '.tkprogress.window'
progress: no visible binding for global variable '.tkprogress.window'
progress: no visible binding for '<<-' assignment to
  '.tkprogress.labelText'
progress: no visible binding for global variable
  '.tkprogress.labelText'
progress: no visible binding for global variable '.tkprogress.iterator'
progress: no visible binding for global variable
  '.tkprogress.fallbackIterator'
progress : <anonymous>: no visible binding for '<<-' assignment to
  '.tkprogress.canceled'
updateProgress: no visible binding for '<<-' assignment to
  '.tkprogress.iterator'
updateProgress: no visible binding for global variable
  '.tkprogress.iterator'
updateProgress: no visible binding for '<<-' assignment to
  '.tkprogress.fallbackIterator'
updateProgress: no visible binding for global variable
  '.tkprogress.fallbackIterator'
updateProgress: no visible binding for '<<-' assignment to
  '.tkprogress.labelText'
updateProgress: no visible binding for global variable
  '.tkprogress.labelText'
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating prada-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating prada-manual.tex ... OK
* checking prada-manual.tex using pdflatex ... OK

prada.Rcheck/00install.out:

installing R.css in E:/biocbld/bbs-2.3-bioc/meat/prada.Rcheck


---------- Making package prada ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  making DLL ...
making inPolygon.d from inPolygon.c
gcc  -std=gnu99  -Ie:/biocbld/bbs-2.3-bioc/R/include     -O3 -Wall  -c inPolygon.c -o inPolygon.o
windres --preprocessor="gcc -E -xc -DRC_INVOKED" -I e:/biocbld/bbs-2.3-bioc/R/include  -i prada_res.rc -o prada_res.o
gcc  -std=gnu99  -shared -s  -o prada.dll prada.def inPolygon.o prada_res.o  -Le:/biocbld/bbs-2.3-bioc/R/bin    -lR
  ... DLL made
  installing DLL
  installing R files
  installing inst files
  installing data files
  preparing package prada for lazy loading
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: RColorBrewer
Loading required package: grid
Loading required package: rrcov
Loading required package: robustbase
Loading required package: pcaPP
Loading required package: mvtnorm
KernSmooth 2.22 installed
Copyright M. P. Wand 1997
Creating a new generic function for "colnames" in "prada"
Creating a new generic function for "nrow" in "prada"
Creating a new generic function for "ncol" in "prada"
Creating a new generic function for "split" in "prada"
  installing man source files
  installing indices
KernSmooth 2.22 installed
Copyright M. P. Wand 1997
Loading required package: methods
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'prada'
     Formats: text html latex example chm 
  analysePlate                      text    html    latex   example chm
  as.all                            text    html    latex   example chm
  barploterrbar                     text    html    latex   example chm
Note: ignoring empty \keyword entries in file 'combineFrames.Rd'
Note: removing empty section \details in file 'combineFrames.Rd'
Note: removing empty section \seealso in file 'combineFrames.Rd'
Note: ignoring empty \keyword entries in file 'combineFrames.Rd'
Note: removing empty section \details in file 'combineFrames.Rd'
Note: removing empty section \seealso in file 'combineFrames.Rd'
  combineFrames                     text    html    latex   example chm
  csApply                           text    html    latex   example chm
  cytoFrame-class                   text    html    latex   example chm
  cytoSet-class                     text    html    latex   example chm
  data-cytoFrame                    text    html    latex   example chm
  data-cytoSet                      text    html    latex   example chm
Note: ignoring empty \keyword entries in file 'devDims.Rd'
Note: ignoring empty \keyword entries in file 'devDims.Rd'
  devDims                           text    html    latex   example chm
Note: ignoring empty \keyword entries in file 'devRes.Rd'
Note: ignoring empty \keyword entries in file 'devRes.Rd'
  devRes                            text    html    latex   example chm
Note: ignoring empty \keyword entries in file 'fitNorm2.Rd'
Note: ignoring empty \keyword entries in file 'fitNorm2.Rd'
  fitNorm2                          text    html    latex   example chm
  gate-class                        text    html    latex   example chm
  gateSet-class                     text    html    latex   example chm
  getPradaPar                       text    html    latex   example chm
  new-internal                      text    html    latex           chm
Note: ignoring empty \keyword entries in file 'plotNorm2.Rd'
Note: ignoring empty \keyword entries in file 'plotNorm2.Rd'
  plotNorm2                         text    html    latex   example chm
  plotPlate                         text    html    latex   example chm
  readCytoSet                       text    html    latex   example chm
  readFCS                           text    html    latex   example chm
Note: removing empty section \examples in file 'readFCSaux.Rd'
Note: removing empty section \examples in file 'readFCSaux.Rd'
  readFCSaux                        text    html    latex           chm
Note: ignoring empty \keyword entries in file 'removeCensored.Rd'
Note: removing empty section \seealso in file 'removeCensored.Rd'
Note: ignoring empty \keyword entries in file 'removeCensored.Rd'
Note: removing empty section \seealso in file 'removeCensored.Rd'
  removeCensored                    text    html    latex   example chm
Note: removing empty section \seealso in file 'tcltkProgress.Rd'
Note: removing empty section \seealso in file 'tcltkProgress.Rd'
  tcltkProgress                     text    html    latex   example chm
  threePanelPlot                    text    html    latex   example chm
Note: ignoring empty \keyword entries in file 'thresholds.Rd'
Note: removing empty section \seealso in file 'thresholds.Rd'
Note: ignoring empty \keyword entries in file 'thresholds.Rd'
Note: removing empty section \seealso in file 'thresholds.Rd'
  thresholds                        text    html    latex   example chm
  touchFCS                          text    html    latex           chm
Note: ignoring empty \keyword entries in file 'vpLocation.Rd'
Note: ignoring empty \keyword entries in file 'vpLocation.Rd'
  vpLocation                        text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling e:\biocbld\bbs-2.3-bioc\meat\prada.Rcheck\00_pkg_src\prada\chm\prada.chm


Compile time: 0 minutes, 0 seconds
28	Topics
182	Local links
11	Internet links
1	Graphic


Created e:\biocbld\bbs-2.3-bioc\meat\prada.Rcheck\00_pkg_src\prada\chm\prada.chm, 59,186 bytes
Compression decreased file by 75,585 bytes.
  adding MD5 sums

* DONE (prada)