Back to the "Multiple platform build/check report" A  B  C  D  E  F  G  H  I  J  K  L  M  N [O] P  Q  R  S  T  U  V  W  X  Y  Z 

Package 195/294HostnameOS / ArchBUILDCHECKBUILD BIN
ontoTools 1.20.0
Vince Carey
Bioconductor Changelog
Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/ontoTools
Last Changed Rev: 34811 / Revision: 38965
Last Changed Date: 2008-10-21 15:32:58 -0700 (Tue, 21 Oct 2008)
wilson2 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64 [ OK ] OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.6) / i386  OK  OK  OK 
Package: ontoTools
Version: 1.20.0
Command: E:\biocbld\bbs-2.3-bioc\R\bin\R.exe CMD build ontoTools
StartedAt: 2009-04-18 15:51:07 -0700 (Sat, 18 Apr 2009)
EndedAt: 2009-04-18 15:55:08 -0700 (Sat, 18 Apr 2009)
EllapsedTime: 240.6 seconds
RetCode: 0
Status: OK
PackageFile: ontoTools_1.20.0.tar.gz
PackageFileSize: 3.308 MiB

Command output

* checking for file 'ontoTools/DESCRIPTION' ... OK
* preparing 'ontoTools':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
installing R.css in E:/biocbld/bbs-2.3-bioc/tmpdir/Rinst209221051


---------- Making package ontoTools ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  installing R files
  installing inst files
  installing data files
  preparing package ontoTools for lazy loading
Loading required package: graph
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: AnnotationDbi
Loading required package: SparseM

Attaching package: 'SparseM'


	The following object(s) are masked from package:stats :

	 model.response 


	The following object(s) are masked from package:base :

	 backsolve,
	 chol 

Loading required package: GO.db
Loading required package: DBI
Loading required package: annotate
Loading required package: xtable
Creating a new generic function for "grep" in "ontoTools"
  installing man source files
  installing indices
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'ontoTools'
     Formats: text html latex example chm 
Note: removing empty section \references in file 'A.csr.Rd'
Note: removing empty section \references in file 'A.csr.Rd'
  A.csr                             text    html    latex           chm
Note: removing empty section \value in file 'GDI.Rd'
Note: removing empty section \references in file 'GDI.Rd'
Note: removing empty section \value in file 'GDI.Rd'
Note: removing empty section \references in file 'GDI.Rd'
  GDI                               text    html    latex   example chm
  LLGOMFcp                          text    html    latex           chm
  OOC-class                         text    html    latex   example chm
Note: removing empty section \references in file 'SGDIvocab.Rd'
Note: removing empty section \references in file 'SGDIvocab.Rd'
  SGDIvocab                         text    html    latex   example chm
Note: removing empty section \value in file 'STMA.Rd'
Note: removing empty section \details in file 'STMA.Rd'
Note: removing empty section \references in file 'STMA.Rd'
Note: removing empty section \value in file 'STMA.Rd'
Note: removing empty section \details in file 'STMA.Rd'
Note: removing empty section \references in file 'STMA.Rd'
  STMA                              text    html    latex   example chm
Note: removing empty section \details in file 'accessMat.Rd'
Note: removing empty section \examples in file 'accessMat.Rd'
Note: removing empty section \details in file 'accessMat.Rd'
Note: removing empty section \examples in file 'accessMat.Rd'
  accessMat                         text    html    latex           chm
  buildGOgraph                      text    html    latex   example chm
Note: removing empty section \examples in file 'compoundGraph-class.Rd'
Note: removing empty section \examples in file 'compoundGraph-class.Rd'
  compoundGraph-class               text    html    latex           chm
  depthStruct                       text    html    latex   example chm
  gomfAmat                          text    html    latex           chm
Note: removing empty section \source in file 'litOnto.Rd'
Note: removing empty section \references in file 'litOnto.Rd'
Note: removing empty section \source in file 'litOnto.Rd'
Note: removing empty section \references in file 'litOnto.Rd'
  litOnto                           text    html    latex           chm
  namedSparse-class                 text    html    latex   example chm
  ontology-class                    text    html    latex   example chm
Note: removing empty section \references in file 'ooMapLL2GOMFdemo.Rd'
Note: removing empty section \references in file 'ooMapLL2GOMFdemo.Rd'
  ooMapLL2GOMFdemo                  text    html    latex           chm
  otkvEnv2namedSparse               text    html    latex   example chm
Note: removing empty section \examples in file 'rootedDAG-class.Rd'
Note: removing empty section \examples in file 'rootedDAG-class.Rd'
  rootedDAG-class                   text    html    latex           chm
  semsim                            text    html    latex   example chm
Note: removing empty section \references in file 'taggedHierNomenclature-class.Rd'
Note: removing empty section \references in file 'taggedHierNomenclature-class.Rd'
  taggedHierNomenclature-class      text    html    latex   example chm
  toDot-methods                     text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702



Compiling e:\biocbld\bbs-2.3-bioc\meat\ontoTools\chm\ontoTools.chm





Compile time: 0 minutes, 2 seconds

21	Topics

179	Local links

0	Internet links

1	Graphic





Created e:\biocbld\bbs-2.3-bioc\meat\ontoTools\chm\ontoTools.chm, 43,880 bytes

Compression decreased file by 62,164 bytes.

  adding MD5 sums

* DONE (ontoTools)
* creating vignettes ... OK
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'ontoTools_1.20.0.tar.gz'