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Package 190/294HostnameOS / ArchBUILDCHECKBUILD BIN
oligo 1.6.0
Benilton Carvalho
Bioconductor Changelog
Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/oligo
Last Changed Rev: 34811 / Revision: 38965
Last Changed Date: 2008-10-21 15:32:58 -0700 (Tue, 21 Oct 2008)
wilson2 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64 [ OK ] OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.6) / i386  OK  OK  OK 
Package: oligo
Version: 1.6.0
Command: E:\biocbld\bbs-2.3-bioc\R\bin\R.exe CMD build oligo
StartedAt: 2009-04-18 16:33:06 -0700 (Sat, 18 Apr 2009)
EndedAt: 2009-04-18 16:53:03 -0700 (Sat, 18 Apr 2009)
EllapsedTime: 1196.9 seconds
RetCode: 0
Status: OK
PackageFile: oligo_1.6.0.tar.gz
PackageFileSize: 302.3 KiB

Command output

* checking for file 'oligo/DESCRIPTION' ... OK
* preparing 'oligo':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
installing R.css in E:/biocbld/bbs-2.3-bioc/tmpdir/Rinst246000909


---------- Making package oligo ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  making DLL ...
making baseProfile.d from baseProfile.c
making basecontent.d from basecontent.c
making rma2.d from rma2.c
making rma_background2.d from rma_background2.c
making rma_common.d from rma_common.c
making trimmed.d from trimmed.c
gcc  -std=gnu99 -Ie:/biocbld/bbs-2.3-bioc/R/src/extra/zlib -DHAVE_ZLIB -Ie:/biocbld/bbs-2.3-bioc/R/include -I"e:/biocbld/bbs-2.3-bioc/R/library/preprocessCore/include"    -O3 -Wall  -c baseProfile.c -o baseProfile.o
gcc  -std=gnu99 -Ie:/biocbld/bbs-2.3-bioc/R/src/extra/zlib -DHAVE_ZLIB -Ie:/biocbld/bbs-2.3-bioc/R/include -I"e:/biocbld/bbs-2.3-bioc/R/library/preprocessCore/include"    -O3 -Wall  -c basecontent.c -o basecontent.o
gcc  -std=gnu99 -Ie:/biocbld/bbs-2.3-bioc/R/src/extra/zlib -DHAVE_ZLIB -Ie:/biocbld/bbs-2.3-bioc/R/include -I"e:/biocbld/bbs-2.3-bioc/R/library/preprocessCore/include"    -O3 -Wall  -c rma2.c -o rma2.o
gcc  -std=gnu99 -Ie:/biocbld/bbs-2.3-bioc/R/src/extra/zlib -DHAVE_ZLIB -Ie:/biocbld/bbs-2.3-bioc/R/include -I"e:/biocbld/bbs-2.3-bioc/R/library/preprocessCore/include"    -O3 -Wall  -c rma_background2.c -o rma_background2.o
gcc  -std=gnu99 -Ie:/biocbld/bbs-2.3-bioc/R/src/extra/zlib -DHAVE_ZLIB -Ie:/biocbld/bbs-2.3-bioc/R/include -I"e:/biocbld/bbs-2.3-bioc/R/library/preprocessCore/include"    -O3 -Wall  -c rma_common.c -o rma_common.o
gcc  -std=gnu99 -Ie:/biocbld/bbs-2.3-bioc/R/src/extra/zlib -DHAVE_ZLIB -Ie:/biocbld/bbs-2.3-bioc/R/include -I"e:/biocbld/bbs-2.3-bioc/R/library/preprocessCore/include"    -O3 -Wall  -c trimmed.c -o trimmed.o
windres --preprocessor="gcc -E -xc -DRC_INVOKED" -I e:/biocbld/bbs-2.3-bioc/R/include  -i oligo_res.rc -o oligo_res.o
gcc  -std=gnu99  -shared -s  -o oligo.dll oligo.def baseProfile.o basecontent.o rma2.o rma_background2.o rma_common.o trimmed.o oligo_res.o  -Le:/biocbld/bbs-2.3-bioc/R/bin    -lR
  ... DLL made
  installing DLL
  installing R files
  installing inst files
  preparing package oligo for lazy loading
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: splines
Loading required package: RSQLite
Loading required package: DBI
Loading required package: preprocessCore
Loading required package: AnnotationDbi
Loading required package: affxparser
Loading required package: oligoClasses
  installing man source files
  installing indices
  installing help
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Compiling e:\biocbld\bbs-2.3-bioc\meat\oligo\chm\oligo.chm





Compile time: 0 minutes, 4 seconds

46	Topics

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Created e:\biocbld\bbs-2.3-bioc\meat\oligo\chm\oligo.chm, 44,302 bytes

Compression decreased file by 100,329 bytes.

  adding MD5 sums

* DONE (oligo)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'oligo_1.6.0.tar.gz'