Back to the "Multiple platform build/check report" A  B  C  D  E  F  G  H [I] J  K  L  M  N  O  P  Q  R  S  T  U  V  W  X  Y  Z 

Package 143/294HostnameOS / ArchBUILDCHECKBUILD BIN
iterativeBMAsurv 1.0.0
Ka Yee Yeung
Bioconductor Changelog
Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/iterativeBMAsurv
Last Changed Rev: 34811 / Revision: 38965
Last Changed Date: 2008-10-21 15:32:58 -0700 (Tue, 21 Oct 2008)
wilson2 Linux (openSUSE 11.1) / x86_64  OK  WARNINGS 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  WARNINGS  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  WARNINGS  OK 
pelham Mac OS X Leopard (10.5.6) / i386  OK [ WARNINGS ] OK 
Package: iterativeBMAsurv
Version: 1.0.0
Command: /Library/Frameworks/R.framework/Versions/2.8/Resources/bin/R CMD check --no-vignettes iterativeBMAsurv_1.0.0.tar.gz
StartedAt: 2009-04-18 17:39:33 -0700 (Sat, 18 Apr 2009)
EndedAt: 2009-04-18 17:41:25 -0700 (Sat, 18 Apr 2009)
EllapsedTime: 112.4 seconds
RetCode: 0
Status: WARNINGS
CheckDir: iterativeBMAsurv.Rcheck
Warnings: 1

Command output

* checking for working pdflatex ... OK
* using log directory '/Users/biocbuild/bbs-2.3-bioc/meat/iterativeBMAsurv.Rcheck'
* using R version 2.8.1 Patched (2009-03-18 r48200)
* using session charset: ASCII
* checking for file 'iterativeBMAsurv/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'iterativeBMAsurv' version '1.0.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'iterativeBMAsurv' can be installed ... WARNING
Found the following significant warnings:
  WARNING: \code inside code block in file 'iterateBMAsurv.train.Rd'
  WARNING: \code inside code block in file 'iterateBMAsurv.train.wrapper.Rd'
  WARNING: \code inside code block in file 'predictiveAssessCategory.Rd'
See '/Users/biocbuild/bbs-2.3-bioc/meat/iterativeBMAsurv.Rcheck/00install.out' for details.
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating iterativeBMAsurv-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating iterativeBMAsurv-manual.tex ... OK
* checking iterativeBMAsurv-manual.tex using pdflatex ... OK

WARNING: There was 1 warning, see
  /Users/biocbuild/bbs-2.3-bioc/meat/iterativeBMAsurv.Rcheck/00check.log
for details

iterativeBMAsurv.Rcheck/00install.out:

* Installing *source* package 'iterativeBMAsurv' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: BMA
Loading required package: survival
Loading required package: splines
Loading required package: leaps
** help
 >>> Building/Updating help pages for package 'iterativeBMAsurv'
     Formats: text html latex example 
  crossVal                          text    html    latex   example
  imageplot.iterate.bma.surv        text    html    latex   example
WARNING: \code inside code block in file 'iterateBMAsurv.train.Rd'
  iterateBMAsurv.train              text    html    latex   example
  iterateBMAsurv.train.predict.asse text    html    latex   example
WARNING: \code inside code block in file 'iterateBMAsurv.train.wrapper.Rd'
  iterateBMAsurv.train.wrapper      text    html    latex   example
  iterativeBMAsurv-internal         text    html    latex
  iterativeBMAsurv-package          text    html    latex   example
Note: removing empty section \note in file 'predictBicSurv.Rd'
  predictBicSurv                    text    html    latex   example
Note: removing empty section \note in file 'predictiveAssessCategory.Rd'
WARNING: \code inside code block in file 'predictiveAssessCategory.Rd'
  predictiveAssessCategory          text    html    latex   example
Note: removing empty section \note in file 'printTopGenes.Rd'
  printTopGenes                     text    html    latex   example
Note: removing empty section \note in file 'singleGeneCoxph.Rd'
  singleGeneCoxph                   text    html    latex   example
Note: removing empty section \details in file 'testCens.Rd'
  testCens                          text    html    latex
  testData                          text    html    latex
Note: removing empty section \details in file 'testSurv.Rd'
  testSurv                          text    html    latex
Note: removing empty section \details in file 'trainCens.Rd'
  trainCens                         text    html    latex
  trainData                         text    html    latex
Note: removing empty section \details in file 'trainSurv.Rd'
  trainSurv                         text    html    latex
** building package indices ...
* DONE (iterativeBMAsurv)