hopach 2.2.0
Katherine S. Pollard
| Bioconductor Changelog | | Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/hopach | | Last Changed Rev: 34811 / Revision: 38965 | | Last Changed Date: 2008-10-21 15:32:58 -0700 (Tue, 21 Oct 2008) |
| wilson2 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | [ OK ] | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.6) / i386 | OK | OK | OK |
* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.3-bioc/meat/hopach.Rcheck'
* using R version 2.8.1 (2008-12-22)
* using session charset: ISO8859-1
* checking for file 'hopach/DESCRIPTION' ... OK
* this is package 'hopach' version '2.2.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'hopach' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating hopach-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating hopach-manual.tex ... OK
* checking hopach-manual.tex using pdflatex ... OK
installing R.css in E:/biocbld/bbs-2.3-bioc/meat/hopach.Rcheck
---------- Making package hopach ------------
adding build stamp to DESCRIPTION
installing NAMESPACE file and metadata
making DLL ...
making Rdistances.d from Rdistances.c
making hdist.d from hdist.c
gcc -std=gnu99 -Ie:/biocbld/bbs-2.3-bioc/R/include -O3 -Wall -c Rdistances.c -o Rdistances.o
gcc -std=gnu99 -Ie:/biocbld/bbs-2.3-bioc/R/include -O3 -Wall -c hdist.c -o hdist.o
windres --preprocessor="gcc -E -xc -DRC_INVOKED" -I e:/biocbld/bbs-2.3-bioc/R/include -i hopach_res.rc -o hopach_res.o
gcc -std=gnu99 -shared -s -o hopach.dll hopach.def Rdistances.o hdist.o hopach_res.o -Le:/biocbld/bbs-2.3-bioc/R/bin -lR
... DLL made
installing DLL
installing R files
installing inst files
installing data files
preparing package hopach for lazy loading
Loading required package: cluster
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Creating a new generic function for "as.vector" in "hopach"
Creating a generic function from function "as.hdist"
Creating a new generic function for "as.matrix" in "hopach"
installing man source files
installing indices
not zipping data
installing help
>>> Building/Updating help pages for package 'hopach'
Formats: text html latex example chm
boot2fuzzy text html latex example chm
bootplot text html latex example chm
bootstrap text html latex example chm
correlationordering text html latex example chm
disscosangle text html latex example chm
distancematrix text html latex example chm
dplot text html latex example chm
golub text html latex chm
hdist-class text html latex example chm
hopach text html latex example chm
hopach.internal text html latex example chm
hopach2tree text html latex example chm
labelstomss text html latex example chm
makeoutput text html latex example chm
prune text html latex example chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\bbs-2.3-bioc\meat\hopach.Rcheck\00_pkg_src\hopach\chm\hopach.chm
Compile time: 0 minutes, 0 seconds
16 Topics
83 Local links
25 Internet links
1 Graphic
Created e:\biocbld\bbs-2.3-bioc\meat\hopach.Rcheck\00_pkg_src\hopach\chm\hopach.chm, 63,675 bytes
Compression decreased file by 61,593 bytes.
adding MD5 sums
* DONE (hopach)