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Package 97/294HostnameOS / ArchBUILDCHECKBUILD BIN
gcrma 2.14.1
Z. Wu
Bioconductor Changelog
Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/gcrma
Last Changed Rev: 34994 / Revision: 38965
Last Changed Date: 2008-10-30 10:36:33 -0700 (Thu, 30 Oct 2008)
wilson2 Linux (openSUSE 11.1) / x86_64 [ OK ] OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.6) / i386  OK  OK  OK 
Package: gcrma
Version: 2.14.1
Command: /home/biocbuild/bbs-2.3-bioc/R/bin/R CMD build gcrma
StartedAt: 2009-04-18 13:16:14 -0700 (Sat, 18 Apr 2009)
EndedAt: 2009-04-18 13:16:19 -0700 (Sat, 18 Apr 2009)
EllapsedTime: 4.4 seconds
RetCode: 0
Status: OK
PackageFile: gcrma_2.14.1.tar.gz
PackageFileSize: 122.5 KiB

Command output

* checking for file 'gcrma/DESCRIPTION' ... OK
* preparing 'gcrma':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
* Installing *source* package 'gcrma' ...
** libs
gcc -std=gnu99 -I/home/biocbuild/bbs-2.3-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c baseProfile.c -o baseProfile.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.3-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c computeAffinities.c -o computeAffinities.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.3-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c postmean.c -o postmean.o
gcc -std=gnu99 -shared -L/usr/local/lib64 -o gcrma.so baseProfile.o computeAffinities.o postmean.o   -L/home/biocbuild/bbs-2.3-bioc/R/lib -lR
** R
** data
** inst
** preparing package for lazy loading
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: affy
Loading required package: matchprobes
Loading required package: splines
** help
 >>> Building/Updating help pages for package 'gcrma'
     Formats: text html latex example 
  affinity.spline.coefs             text    html    latex
  bg.adjust.affinities              text    html    latex
  bg.adjust.gcrma                   text    html    latex   example
  bg.parameters.ns                  text    html    latex
  compute.affinities                text    html    latex
  fast.bkg                          text    html    latex
  gcrma                             text    html    latex   example
Note: removing empty section \examples in file 'gcrma.engine.Rd'
  gcrma.engine                      text    html    latex
Note: removing empty section \examples in file 'gcrma.engine2.Rd'
  gcrma.engine2                     text    html    latex
  getCDF                            text    html    latex
Note: removing empty section \examples in file 'justGCRMA.Rd'
  justGCRMA                         text    html    latex
** building package indices ...
* DONE (gcrma)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'gcrma_2.14.1.tar.gz'