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Package 84/294HostnameOS / ArchBUILDCHECKBUILD BIN
exonmap 2.0.03
Crispin Miller
Bioconductor Changelog
Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/exonmap
Last Changed Rev: 35851 / Revision: 38965
Last Changed Date: 2008-12-11 00:31:07 -0800 (Thu, 11 Dec 2008)
wilson2 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.6) / i386  OK [ OK ] OK 
Package: exonmap
Version: 2.0.03
Command: /Library/Frameworks/R.framework/Versions/2.8/Resources/bin/R CMD check --no-vignettes exonmap_2.0.03.tar.gz
StartedAt: 2009-04-18 17:20:20 -0700 (Sat, 18 Apr 2009)
EndedAt: 2009-04-18 17:21:32 -0700 (Sat, 18 Apr 2009)
EllapsedTime: 71.7 seconds
RetCode: 0
Status: OK
CheckDir: exonmap.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory '/Users/biocbuild/bbs-2.3-bioc/meat/exonmap.Rcheck'
* using R version 2.8.1 Patched (2009-03-18 r48200)
* using session charset: ASCII
* checking for file 'exonmap/DESCRIPTION' ... OK
* this is package 'exonmap' version '2.0.03'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'exonmap' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating exonmap-Ex.R ... OK
* checking examples ... OK
* creating exonmap-manual.tex ... OK
* checking exonmap-manual.tex using pdflatex ... OK

exonmap.Rcheck/00install.out:

* Installing *source* package 'exonmap' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: affy
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: genefilter
Loading required package: survival
Loading required package: splines
Loading required package: RColorBrewer
Loading required package: RMySQL
Loading required package: DBI
** help
 >>> Building/Updating help pages for package 'exonmap'
     Formats: text html latex example 
  PC-class                          text    html    latex   example
  array.subset                      text    html    latex   example
  db.local.info                     text    html    latex   example
  details                           text    html    latex   example
  filters                           text    html    latex   example
  gene.graph                        text    html    latex   example
  gene.legend                       text    html    latex   example
  gene.strip                        text    html    latex   example
  group.indices                     text    html    latex   example
  mappings                          text    html    latex   example
  pc                                text    html    latex   example
  plotGene                          text    html    latex   example
  probes.in.range                   text    html    latex   example
  probeset.stats                    text    html    latex   example
  read.exon                         text    html    latex   example
  si                                text    html    latex   example
  x.rma                             text    html    latex
  xmapConnect                       text    html    latex   example
  xmapGene                          text    html    latex   example
** building package indices ...
* DONE (exonmap)