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Package 69/294HostnameOS / ArchBUILDCHECKBUILD BIN
cosmoGUI 1.8.0
Oliver Bembom
Bioconductor Changelog
Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/cosmoGUI
Last Changed Rev: 34811 / Revision: 38965
Last Changed Date: 2008-10-21 15:32:58 -0700 (Tue, 21 Oct 2008)
wilson2 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.6) / i386  OK [ OK ] OK 
Package: cosmoGUI
Version: 1.8.0
Command: /Library/Frameworks/R.framework/Versions/2.8/Resources/bin/R CMD check --no-vignettes cosmoGUI_1.8.0.tar.gz
StartedAt: 2009-04-18 17:16:46 -0700 (Sat, 18 Apr 2009)
EndedAt: 2009-04-18 17:17:19 -0700 (Sat, 18 Apr 2009)
EllapsedTime: 33.5 seconds
RetCode: 0
Status: OK
CheckDir: cosmoGUI.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory '/Users/biocbuild/bbs-2.3-bioc/meat/cosmoGUI.Rcheck'
* using R version 2.8.1 Patched (2009-03-18 r48200)
* using session charset: ASCII
* checking for file 'cosmoGUI/DESCRIPTION' ... OK
* this is package 'cosmoGUI' version '1.8.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'cosmoGUI' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
advanced: no visible binding for '<<-' assignment to 'COSMO.WIDGET'
advancedBuild: no visible binding for '<<-' assignment to
  'COSMO.CONSTRAINTS'
constraintBuilder: no visible binding for global variable
  'COSMO.CONSTRAINTS'
constraintBuilder: no visible binding for '<<-' assignment to
  'COSMO.CONSTRAINTS'
mysample: no visible binding for '<<-' assignment to 'COSMO.WIDGET'
sampleA: no visible binding for '<<-' assignment to 'COSMO.CONSTRAINTS'
sampleICBound: no visible binding for '<<-' assignment to
  'COSMO.CONSTRAINTS'
sampleICStep: no visible binding for '<<-' assignment to
  'COSMO.CONSTRAINTS'
sampleV: no visible binding for '<<-' assignment to 'COSMO.CONSTRAINTS'
subMotif: no visible binding for '<<-' assignment to
  'COSMO.CONSTRAINTS'
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating cosmoGUI-Ex.R ... OK
* checking examples ... OK
* creating cosmoGUI-manual.tex ... OK
* checking cosmoGUI-manual.tex using pdflatex ... OK

cosmoGUI.Rcheck/00install.out:

* Installing *source* package 'cosmoGUI' ...
** R
** preparing package for lazy loading
Loading required package: tkWidgets
Loading required package: widgetTools
Loading required package: tcltk
Loading Tcl/Tk interface ... done
Loading required package: DynDoc
Loading required package: tools
Loading required package: cosmo
Loading required package: seqLogo
Loading required package: grid

Welcome to cosmo version 1.8.0 

cosmo is free for research purposes only. For more details, type
license.cosmo(). Type citation('cosmo') for details on how to cite
cosmo in publications.
** help
 >>> Building/Updating help pages for package 'cosmoGUI'
     Formats: text html latex example 
Note: removing empty section \seealso in file 'constraintBuilder.Rd'
  constraintBuilder                 text    html    latex   example
** building package indices ...
* DONE (cosmoGUI)