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Package 43/294HostnameOS / ArchBUILDCHECKBUILD BIN
biocViews 1.10.6
Biocore Team c/o BioC user list
Bioconductor Changelog
Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/biocViews
Last Changed Rev: 37909 / Revision: 38965
Last Changed Date: 2009-03-11 12:27:16 -0700 (Wed, 11 Mar 2009)
wilson2 Linux (openSUSE 11.1) / x86_64  OK [ OK ]
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.6) / i386  OK  OK  OK 
Package: biocViews
Version: 1.10.6
Command: /home/biocbuild/bbs-2.3-bioc/R/bin/R CMD check --no-vignettes biocViews_1.10.6.tar.gz
StartedAt: 2009-04-18 15:04:59 -0700 (Sat, 18 Apr 2009)
EndedAt: 2009-04-18 15:05:30 -0700 (Sat, 18 Apr 2009)
EllapsedTime: 30.4 seconds
RetCode: 0
Status: OK
CheckDir: biocViews.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.3-bioc/meat/biocViews.Rcheck'
* using R version 2.8.1 (2008-12-22)
* using session charset: UTF-8
* checking for file 'biocViews/DESCRIPTION' ... OK
* this is package 'biocViews' version '1.10.6'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'biocViews' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
htmlDoc,BiocView: no visible binding for global variable ‘stylesheet’
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating biocViews-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating biocViews-manual.tex ... OK
* checking biocViews-manual.tex using pdflatex ... OK

biocViews.Rcheck/00install.out:

* Installing *source* package 'biocViews' ...
** R
** data
** inst
** preparing package for lazy loading
** help
 >>> Building/Updating help pages for package 'biocViews'
     Formats: text html latex example 
  BiocView-class                    text    html    latex
  Htmlized-class                    text    html    latex
  PackageDetail-class               text    html    latex   example
  RepositoryDetail-class            text    html    latex
  biocViews-package                 text    html    latex   example
  biocViewsVocab                    text    html    latex   example
  extractManuals                    text    html    latex
  extractVignettes                  text    html    latex
  genReposControlFiles              text    html    latex
  getBiocSubViews                   text    html    latex   example
  getBiocViews                      text    html    latex   example
  getPacksAndViews                  text    html    latex
  getSubTerms                       text    html    latex   example
  htmlDoc                           text    html    latex
  htmlFilename                      text    html    latex
  htmlValue                         text    html    latex
  writeBiocViews                    text    html    latex
  writeHtmlDoc                      text    html    latex
  writePackageDetailHtml            text    html    latex
  writeRepositoryHtml               text    html    latex
  writeTopLevelView                 text    html    latex
  write_REPOSITORY                  text    html    latex
  write_SYMBOLS                     text    html    latex
  write_VIEWS                       text    html    latex
** building package indices ...
* DONE (biocViews)