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Package 36/294HostnameOS / ArchBUILDCHECKBUILD BIN
bgafun 1.4.0
Iain Wallace
Bioconductor Changelog
Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/bgafun
Last Changed Rev: 34811 / Revision: 38965
Last Changed Date: 2008-10-21 15:32:58 -0700 (Tue, 21 Oct 2008)
wilson2 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK [ OK ] OK 
pelham Mac OS X Leopard (10.5.6) / i386  OK  OK  OK 
Package: bgafun
Version: 1.4.0
Command: /Library/Frameworks/R.framework/Versions/2.8/Resources/bin/R CMD check --no-vignettes bgafun_1.4.0.tar.gz
StartedAt: 2009-04-18 16:28:01 -0700 (Sat, 18 Apr 2009)
EndedAt: 2009-04-18 16:29:34 -0700 (Sat, 18 Apr 2009)
EllapsedTime: 93.1 seconds
RetCode: 0
Status: OK
CheckDir: bgafun.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory '/Users/biocbuild/bbs-2.3-bioc/meat/bgafun.Rcheck'
* using R version 2.8.1 (2008-12-22)
* using session charset: ASCII
* checking for file 'bgafun/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'bgafun' version '1.4.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'bgafun' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating bgafun-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating bgafun-manual.tex ... OK
* checking bgafun-manual.tex using pdflatex ... OK

bgafun.Rcheck/00install.out:

* Installing *source* package 'bgafun' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: made4
Loading required package: ade4

Attaching package: 'ade4'


	The following object(s) are masked from package:base :

	 within 

Loading required package: seqinr
** help
 >>> Building/Updating help pages for package 'bgafun'
     Formats: text html latex example 
  Calculate_Row_Weights             text    html    latex   example
  Henikoff_weights                  text    html    latex
  LDH                               text    html    latex
  LDH.aap                           text    html    latex
  LDH.aap.ave                       text    html    latex
  LDH.amino                         text    html    latex
  LDH.amino.gapless                 text    html    latex
  LDH.amino.pseudo                  text    html    latex
  LDH.groups                        text    html    latex
  Weight_Amino                      text    html    latex
  add_pseudo_counts                 text    html    latex   example
  amino_counts                      text    html    latex
  average_cols_aap                  text    html    latex   example
  bgafun                            text    html    latex   example
  calculate_pseudo                  text    html    latex
  convertAAP.package                text    html    latex
  convert_aln_AAP                   text    html    latex   example
  convert_aln_amino                 text    html    latex   example
  convert_amino.package             text    html    latex
  convert_seq_AAP                   text    html    latex
  convert_seq_amino                 text    html    latex
  create_colnames_AAP               text    html    latex
  create_colnames_amino             text    html    latex
  create_probab                     text    html    latex
  create_profile                    text    html    latex
  create_profile_strings            text    html    latex   example
  pseudo_counts                     text    html    latex
  remove_gaps                       text    html    latex
  remove_gaps_groups                text    html    latex   example
  run_between_pca                   text    html    latex   example
  sum_20_aln                        text    html    latex
  sum_20_cols                       text    html    latex
  sum_aln                           text    html    latex
  top_residues_2_groups             text    html    latex   example
** building package indices ...
* DONE (bgafun)